Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00060 ATGGCTGATGCTGAGGATATCCAGCCACTTGTCTGCGACAATGGAACCGGAATGGTGAAGGCTGGATTTGCCGGCGATGATGCTCCCAGGGCAGTGTTTCCAAGTATTGTTGGTCGACCTCGACATACTGGTGTCATGGTGGGTATGGGCCAGAAAGATGCTTATGTTGGTGACGAGGCCCAATCCAAAAGAGGTATTCTTACTTTGAAATATCCCATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATTTGGCATCACACATTCTACAATGAGCTTCGTGTTGCACCTGAAGAACACCCAGTTCTTCTCACTGAAGCTCCTCTCAATCCTAAAGCCAACAGAGAAAAGATGACACAAATCATGTTTGAAACTTTTAATGTACCTGCCATGTATGTTGCCATCCAGGCCGTCCTATCACTGTATGCCAGTGGTCGTACAACAGGTATCGTGCTCGACTCTGGTGATGGTGTGAGTCATACTGTGCCAATCTATGAGGGTTATGCTCTTCCCCATGCTATCCTCCGTCTCGACCTTGCTGGTCGTGATCTAACTGATGCTTTGATGAAGATTCTCACTGAGAGAGGGTACATGTTCACAACCACTGCCGAACGGGAAATTGTTCGTGACATGAAAGAGAAGCTTGCTTATGTTGCACTCGACTATGAGCAGGAACTTGAGACTGCTAAGAGTAGCTCCTCAATTGAGAAGAACTATGAACTGCCCGATGGACAAGTCATCACAATTGGAGCTGAGAGATTCCGTTGCCCCGAAGTTCTTTTCCAGCCATCCCTCATCGGAATGGAAGCTGCTGGAATCCACGAGACTACCTACAACTCAATCATGAAGTGTGATGTGGATATCAGAAAAGATTTGTATGGCAACATTGTTCTCAGTGGTGGTTCTACCATGTTCCCTGGTATCGCTGACCGTATGAGCAAAGAGATCACAGCTCTTGCTCCCAGCAGCATGAAAATCAAGGTCGTTGCACCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGATCCATCCTTGCATCGCTCAGTACCTTCCAGCAGGCGAGAGATACTCCCCTCATTTACCACGTAATCTCTCTTTTGTTCTCATTTCTCGCACTAATACTCTTTGTTTTACCAGATGTGGATCTCAAAGGGTGA 1167 46.62 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQARDTPLIYHVISLLFSFLALILFVLPDVDLKG* 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 639147 640564 + Chy11G186400.1 Chy11g00060 235821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00060 388 Gene3D - 140 340 - -
Chy11g00060 388 SMART actin_3 7 374 IPR004000 -
Chy11g00060 388 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Chy11g00060 388 Gene3D Actin; Chain A, domain 4 182 273 - -
Chy11g00060 388 Pfam Actin 5 357 IPR004000 -
Chy11g00060 388 Gene3D - 10 357 - -
Chy11g00060 388 PRINTS Actin signature 63 85 IPR004000 -
Chy11g00060 388 PRINTS Actin signature 142 161 IPR004000 -
Chy11g00060 388 PRINTS Actin signature 51 62 IPR004000 -
Chy11g00060 388 PRINTS Actin signature 117 130 IPR004000 -
Chy11g00060 388 PRINTS Actin signature 28 37 IPR004000 -
Chy11g00060 388 PRINTS Actin signature 238 254 IPR004000 -
Chy11g00060 388 SUPERFAMILY Actin-like ATPase domain 149 357 IPR043129 -
Chy11g00060 388 PANTHER ACTIN 1 357 IPR004000 -
Chy11g00060 388 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Chy11g00060 388 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Chy11g00060 388 PANTHER ACTIN 1 357 - -
Chy11g00060 388 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00757 Chy-Chr8:15277610 Chy11g00060 Chy-Chr11:639147 0 dispersed
Chy10g00547 Chy-Chr10:12097906 Chy11g00060 Chy-Chr11:639147 0 dispersed
Chy02g02375 Chy-Chr2:27575528 Chy11g00060 Chy-Chr11:639147 1.50E-08 transposed
Chy10g00822 Chy-Chr10:14179138 Chy11g00060 Chy-Chr11:639147 5.57E-63 transposed
Chy11g00060 Chy-Chr11:639147 Chy02g01031 Chy-Chr2:7030507 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00060 K10355 - csv:101215469 711.835