Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00065 ATGTTTTTGCTTTCAAAGGCAGCATTCAACGCCGGAATGAACCATTATGTCTATATCTTTTATCGCCAGGTCGCCGCCACTGTCTTCCTTTCTCCTTTCGCCTTTTTTCGATGTTATACCGATCACGTTAGGATAGCCATATGTTTAAATTTGTATGGAATTGCTCTCGTGTACACGTCAGCAACATTGGCTGCAGCAACTGCCAATTGTCTTCCTGTCATCACCTTCTTTGTCGCGCTTTTATTTAGGATGGAGGTGTTGAGGTTGAAGTCAATAGCAGGAGCTGCAAAGCTAGCAGGAATATTATTTTGCATTGGTGGTGTTGGGATTGTGGCATTTTACAAAGGCCCCCAATTGAATTTGTTTAACAATCACCATCATCTCCTTTCTATCCATAAACCTAATAATAATCACCATTCTTCTTCTCTTCCATTGACGAATAACTCTTGGTTGATGGGTTGCTTTTTGATGCTATCTTCCAATACCTTATGGAGTGTTTGGGTTGTTCTTCAGGCAATGGTATTGAAAAGCTATTCTTCGAAGCTTCAATTGACAAATCTTCAATGTTTATTAAGTTCATTTCAATCATTTGGTATTGCCATTGCAATGGAAAGACAACCTCATAAATGGAAACTTGGTTGGAATCTTCAGCTTCTTGCAGTCATATATTGTGGCATGATGACTGCGGTTACGTTTTGTCTTCAAGTTTGGGTTATTGAGAAGAAAGGACCTGTTTATTTAGCCATGTCAACCCCTTTGGCTCTTATCATCACAGCCTTCTTTTCTGCTATATTTCTTGGTGAGAGTATCACTCTTGGAAGTACTTTAGGGGGAATGTTGTTGGTGGGAGGGCTGTATTTTGTGCTATGGGGAAAGAGCAAAGAGCAAACAATAAGTGACGCATTGAAAGAAGGTACCAAAGAAGGCAACATGGAAGAAGGGAAATATATCACTAAATCAGACAATGAAAATATGGCATCTCTTTAG 987 39.61 MFLLSKAAFNAGMNHYVYIFYRQVAATVFLSPFAFFRCYTDHVRIAICLNLYGIALVYTSATLAAATANCLPVITFFVALLFRMEVLRLKSIAGAAKLAGILFCIGGVGIVAFYKGPQLNLFNNHHHLLSIHKPNNNHHSSSLPLTNNSWLMGCFLMLSSNTLWSVWVVLQAMVLKSYSSKLQLTNLQCLLSSFQSFGIAIAMERQPHKWKLGWNLQLLAVIYCGMMTAVTFCLQVWVIEKKGPVYLAMSTPLALIITAFFSAIFLGESITLGSTLGGMLLVGGLYFVLWGKSKEQTISDALKEGTKEGNMEEGKYITKSDNENMASL* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 676935 681288 - Chy11G186450.1 Chy11g00065 235826

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00065 328 SUPERFAMILY Multidrug resistance efflux transporter EmrE 198 294 - -
Chy11g00065 328 Pfam EamA-like transporter family 152 289 IPR000620 GO:0016020|GO:0016021
Chy11g00065 328 PANTHER WAT1-RELATED PROTEIN 1 299 IPR030184 GO:0016021|GO:0022857
Chy11g00065 328 PANTHER WAT1-RELATED PROTEIN 1 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00065 - - - csv:101202788 593.964
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00065 Chy-Chr11:676935 Chy08g00232 Chy-Chr8:5223604 4.02E-60 dispersed
Chy11g00065 Chy-Chr11:676935 Chy11g00066 Chy-Chr11:684881 4.85E-154 tandem
Chy11g00065 Chy-Chr11:676935 Chy02g01022 Chy-Chr2:6920765 5.84E-85 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy07g01095 . 1 757 Nodulin-like Gene Family AT4G19180 61.0 3.2e-251 864.8
Chy07g00601 . 24 283 Nodulin-like Gene Family AT3G45870 70.8 2.8e-99 358.6
Chy09g00320 CCT 12 368 Nodulin-like Gene Family AT3G28050 60.7 1.8e-117 419.5
Chy09g00320 CCT 127 335 Nodulin-like Gene Family AT3G28080 51.0 4.1e-51 198.4
Chy06g02058 . 1 340 Nodulin-like Gene Family AT5G47470 59.1 2.3e-104 375.9
Chy09g00320 CCT 10 335 Nodulin-like Gene Family AT5G40230 56.5 1.1e-95 347.1
Chy04g01478 . 4 335 Nodulin-like Gene Family AT5G40230 50.6 3.1e-85 312.4
Chy09g00320 CCT 12 335 Nodulin-like Gene Family AT5G40240 55.2 4.0e-93 338.6
Chy04g01479 CCT,ECH 1 355 Nodulin-like Gene Family AT5G40240 50.8 4.1e-90 328.6
Chy04g00454 CCT,ECH 19 276 Nodulin-like Gene Family AT3G53210 62.4 1.7e-85 312.8
Chy03g01417 CCT,ECH 16 283 Nodulin-like Gene Family AT3G53210 57.1 1.6e-83 306.2
Chy02g02335 . 9 260 Nodulin-like Gene Family AT3G53210 50.4 9.9e-70 260.4
Chy08g00779 . 99 332 Nodulin-like Gene Family AT2G37450 65.8 9.2e-84 307.0
Chy10g00555 . 98 360 Nodulin-like Gene Family AT2G37450 52.3 9.3e-68 253.8
Chy08g00779 . 12 341 Nodulin-like Gene Family AT2G37460 68.8 5.3e-125 444.5
Chy10g00555 . 11 335 Nodulin-like Gene Family AT2G37460 56.6 2.8e-97 352.4
Chy10g00554 . 11 335 Nodulin-like Gene Family AT2G37460 54.5 1.5e-95 346.7
Chy07g00654 . 15 352 Nodulin-like Gene Family AT2G37460 52.2 2.0e-95 346.3
Chy04g01678 . 12 339 Nodulin-like Gene Family AT2G37460 51.7 1.1e-85 313.9
Chy09g00770 . 97 281 Nodulin-like Gene Family AT2G37460 51.9 1.1e-45 181.0
Chy03g01417 CCT,ECH 1 397 Nodulin-like Gene Family AT1G75500 71.6 4.4e-159 557.8
Chy04g00454 CCT,ECH 19 392 Nodulin-like Gene Family AT1G75500 74.3 1.1e-149 526.6
Chy02g02335 . 9 340 Nodulin-like Gene Family AT1G75500 61.2 2.5e-114 409.1
Chy10g00923 CCT 12 367 Nodulin-like Gene Family AT1G60050 52.8 6.0e-97 351.3
Chy08g00779 . 12 333 Nodulin-like Gene Family AT5G13670 52.6 1.5e-90 330.1
Chy10g00554 . 9 349 Nodulin-like Gene Family AT2G39510 59.5 4.2e-114 408.3
Chy08g00779 . 13 353 Nodulin-like Gene Family AT2G39510 59.4 2.7e-113 405.6
Chy10g00555 . 12 336 Nodulin-like Gene Family AT2G39510 60.6 3.6e-110 395.2
Chy09g00760 . 8 331 Nodulin-like Gene Family AT2G39510 57.2 1.2e-108 390.2
Chy07g00654 . 18 370 Nodulin-like Gene Family AT2G39510 54.5 9.0e-101 364.0
Chy04g01678 . 16 337 Nodulin-like Gene Family AT2G39510 52.9 7.1e-90 327.8
Chy08g00232 . 16 342 Nodulin-like Gene Family AT2G39510 50.9 1.0e-88 323.9
Chy10g00710 . 14 315 Nodulin-like Gene Family AT2G39510 50.3 1.6e-81 300.1
Chy09g00770 . 96 281 Nodulin-like Gene Family AT2G39510 58.6 4.0e-56 215.7
Chy04g01479 CCT,ECH 1 335 Nodulin-like Gene Family AT4G15540 50.1 3.4e-86 315.5
Chy03g00876 . 20 277 Nodulin-like Gene Family AT4G08290 63.8 4.6e-89 324.7
Chy07g00654 . 14 265 Nodulin-like Gene Family AT4G08290 52.6 1.7e-72 269.6
Chy07g00654 . 12 357 Nodulin-like Gene Family AT4G08300 65.8 5.8e-124 441.0
Chy03g00876 . 27 349 Nodulin-like Gene Family AT4G08300 50.9 2.7e-89 325.9
Chy11g00066 . 3 248 Nodulin-like Gene Family AT5G64700 61.1 1.3e-74 276.6
Chy11g00065 . 1 224 Nodulin-like Gene Family AT5G64700 53.3 6.9e-55 211.1
Chy10g00710 . 10 316 Nodulin-like Gene Family AT5G07050 72.9 9.9e-130 460.3
Chy04g01678 . 10 381 Nodulin-like Gene Family AT5G07050 61.1 1.3e-124 443.4
Chy08g00232 . 6 342 Nodulin-like Gene Family AT5G07050 63.6 4.2e-120 428.3
Chy04g01676 . 8 337 Nodulin-like Gene Family AT5G07050 58.1 5.8e-106 381.3
Chy08g00779 . 11 343 Nodulin-like Gene Family AT5G07050 51.9 1.8e-94 343.2
Chy07g00654 . 18 338 Nodulin-like Gene Family AT5G07050 52.1 2.0e-93 339.7
Chy08g00232 . 13 360 Nodulin-like Gene Family AT3G56620 56.3 1.7e-102 369.8
Chy04g01678 . 12 343 Nodulin-like Gene Family AT3G56620 53.1 1.3e-99 360.1
Chy10g00710 . 15 316 Nodulin-like Gene Family AT3G56620 57.6 5.0e-91 331.6
Chy10g00923 CCT 12 375 Nodulin-like Gene Family AT1G70260 52.9 4.3e-103 371.7
Chy12g00604 . 3 331 Nodulin-like Gene Family AT1G09380 61.8 3.3e-111 398.7
Chy05g01017 . 1 302 Nodulin-like Gene Family AT1G09380 59.3 1.1e-103 373.6
Chy08g00232 . 13 355 Nodulin-like Gene Family AT2G40900 58.6 4.4e-106 381.7
Chy04g01678 . 9 352 Nodulin-like Gene Family AT2G40900 54.8 5.4e-104 374.8
Chy04g01676 . 10 342 Nodulin-like Gene Family AT2G40900 50.7 2.5e-93 339.3
Chy10g00710 . 15 316 Nodulin-like Gene Family AT2G40900 57.9 2.5e-93 339.3
Chy02g02335 . 1 339 Nodulin-like Gene Family AT3G18200 69.3 4.8e-126 448.0
Chy03g01417 CCT,ECH 16 363 Nodulin-like Gene Family AT3G18200 56.9 3.0e-107 385.6
Chy04g00454 CCT,ECH 19 356 Nodulin-like Gene Family AT3G18200 54.7 6.0e-100 361.3
Chy07g00654 . 12 362 Nodulin-like Gene Family AT1G44800 64.1 5.2e-125 444.5
Chy03g00876 . 27 349 Nodulin-like Gene Family AT1G44800 50.5 1.3e-91 333.6
Chy08g00779 . 13 333 Nodulin-like Gene Family AT1G44800 50.3 3.3e-87 318.9
Chy07g00601 . 108 378 Nodulin-like Gene Family AT5G45370 67.6 7.9e-102 367.1
Chy07g00654 . 12 315 Nodulin-like Gene Family AT1G21890 64.7 1.5e-113 406.4
Chy04g01678 . 8 315 Nodulin-like Gene Family AT1G21890 51.6 1.7e-85 313.2
Chy08g00232 . 5 321 Nodulin-like Gene Family AT1G21890 53.5 1.6e-83 306.6
Chy08g00779 . 11 313 Nodulin-like Gene Family AT1G21890 51.0 3.3e-81 298.9
Chy07g01584 . 1 566 Nodulin-like Gene Family AT1G80530 58.9 6.7e-185 644.0
Chy07g01110 . 1 416 Nodulin-like Gene Family AT4G19450 67.4 8.0e-151 530.4
Chy11g01960 . 1 399 Nodulin-like Gene Family AT4G19450 57.0 6.2e-127 451.1
Chy02g02527 . 5 538 Nodulin-like Gene Family AT1G74780 58.1 3.8e-177 618.2
Chy02g02529 . 10 525 Nodulin-like Gene Family AT1G74780 57.5 2.1e-167 585.9
Chy11g00271 CCT 9 534 Nodulin-like Gene Family AT4G34950 69.5 1.2e-216 749.6
Chy01g00687 CCT 10 515 Nodulin-like Gene Family AT4G34950 65.5 1.4e-201 699.5
Chy03g00103 . 6 592 Nodulin-like Gene Family AT5G14120 68.6 1.7e-231 798.9
Chy11g00271 CCT 1 384 Nodulin-like Gene Family AT2G16660 66.8 3.4e-143 505.0
Chy01g00687 CCT 4 368 Nodulin-like Gene Family AT2G16660 65.5 3.9e-139 491.5
Chy10g01293 . 14 564 Nodulin-like Gene Family AT2G39210 71.3 2.1e-224 775.4
Chy10g01289 . 14 580 Nodulin-like Gene Family AT2G39210 66.9 1.0e-215 746.5
Chy03g00916 . 31 601 Nodulin-like Gene Family AT2G39210 62.9 2.1e-208 722.2
Chy10g01292 . 13 579 Nodulin-like Gene Family AT2G39210 65.0 1.4e-207 719.5
Chy10g01286 . 3 560 Nodulin-like Gene Family AT2G39210 63.4 4.5e-203 704.5
Chy04g02032 . 17 579 Nodulin-like Gene Family AT2G39210 60.9 1.6e-195 679.5
Chy12g00832 . 22 578 Nodulin-like Gene Family AT2G39210 57.8 2.9e-186 648.7
Chy04g02035 . 11 548 Nodulin-like Gene Family AT2G39210 58.0 3.8e-178 621.7
Chy08g00356 . 15 539 Nodulin-like Gene Family AT2G39210 51.6 2.8e-152 535.8
Chy10g01290 . 2 219 Nodulin-like Gene Family AT2G39210 68.3 4.1e-79 292.7
Chy04g02030 . 1 257 Nodulin-like Gene Family AT2G39210 57.0 2.8e-72 270.0
Chy10g01291 . 1 193 Nodulin-like Gene Family AT2G39210 61.0 1.7e-69 260.8
Chy10g01287 . 2 193 Nodulin-like Gene Family AT2G39210 66.8 1.2e-65 248.1
Chy08g00875 . 1 189 Nodulin-like Gene Family AT2G39210 60.8 3.3e-60 229.9
Chy08g00876 . 26 165 Nodulin-like Gene Family AT2G39210 65.7 1.3e-53 208.0
Chy10g01288 . 99 236 Nodulin-like Gene Family AT2G39210 65.0 1.9e-36 151.0
Chy07g01110 . 6 564 Nodulin-like Gene Family AT3G01630 53.3 1.3e-151 533.5
Chy11g01960 . 7 546 Nodulin-like Gene Family AT3G01630 50.7 3.9e-140 495.4
Chy03g00103 . 6 429 Nodulin-like Gene Family AT3G01930 68.9 1.2e-165 579.7
Chy02g02527 . 4 541 Nodulin-like Gene Family AT1G18940 54.0 6.6e-166 580.9
Chy02g02529 . 7 527 Nodulin-like Gene Family AT1G18940 52.7 6.4e-153 537.7
Chy02g02527 . 5 539 Nodulin-like Gene Family AT2G34350 55.5 4.4e-162 568.2
Chy02g02529 . 11 525 Nodulin-like Gene Family AT2G34350 54.7 1.3e-150 530.0
Chy12g00832 . 16 581 Nodulin-like Gene Family AT2G28120 69.8 7.6e-224 773.5
Chy10g01293 . 18 561 Nodulin-like Gene Family AT2G28120 61.3 5.0e-191 664.5
Chy03g00916 . 29 585 Nodulin-like Gene Family AT2G28120 58.9 2.2e-183 639.0
Chy10g01289 . 17 560 Nodulin-like Gene Family AT2G28120 58.9 2.2e-183 639.0
Chy10g01292 . 8 562 Nodulin-like Gene Family AT2G28120 57.2 4.2e-182 634.8
Chy04g02032 . 14 565 Nodulin-like Gene Family AT2G28120 58.8 3.9e-180 628.2
Chy10g01286 . 1 563 Nodulin-like Gene Family AT2G28120 56.9 2.0e-176 615.9
Chy12g00848 . 13 569 Nodulin-like Gene Family AT2G28120 56.1 7.2e-174 607.4
Chy04g02035 . 15 556 Nodulin-like Gene Family AT2G28120 55.3 3.8e-167 585.1
Chy12g00839 . 3 572 Nodulin-like Gene Family AT2G28120 52.8 2.1e-165 579.3
Chy12g00847 . 18 555 Nodulin-like Gene Family AT2G28120 50.7 4.4e-155 545.0
Chy08g00356 . 9 547 Nodulin-like Gene Family AT2G28120 51.2 1.0e-151 533.9
Chy12g00834 . 9 547 Nodulin-like Gene Family AT2G28120 50.5 1.9e-150 529.6
Chy10g01290 . 2 200 Nodulin-like Gene Family AT2G28120 62.8 3.1e-68 256.5
Chy04g02030 . 1 250 Nodulin-like Gene Family AT2G28120 51.6 1.4e-65 247.7
Chy10g01287 . 2 207 Nodulin-like Gene Family AT2G28120 57.5 1.6e-59 227.6
Chy10g01291 . 1 191 Nodulin-like Gene Family AT2G28120 53.7 5.5e-57 219.2
Chy08g00875 . 1 189 Nodulin-like Gene Family AT2G28120 58.2 1.2e-56 218.0
Chy08g00876 . 24 165 Nodulin-like Gene Family AT2G28120 64.8 2.2e-50 197.2
Chy07g01110 . 1 569 Nodulin-like Gene Family AT1G31470 57.4 2.0e-171 599.4
Chy11g01960 . 7 546 Nodulin-like Gene Family AT1G31470 57.0 5.4e-161 564.7
Chy03g00517 . 18 218 Nodulin-like Gene Family AT1G76800 69.7 6.2e-69 257.3
Chy05g00486 . 1 197 Nodulin-like Gene Family AT1G76800 60.4 7.6e-59 223.8
Chy01g01287 . 28 187 Nodulin-like Gene Family AT1G76800 63.1 6.5e-50 194.1
Chy05g00486 . 3 196 Nodulin-like Gene Family AT3G25190 67.3 1.1e-63 240.0
Chy03g00517 . 24 217 Nodulin-like Gene Family AT3G25190 62.9 3.8e-59 224.9
Chy03g00517 . 4 218 Nodulin-like Gene Family AT1G21140 70.7 2.5e-73 271.9
Chy05g00486 . 9 197 Nodulin-like Gene Family AT1G21140 64.6 5.2e-63 237.7
Chy01g01287 . 30 187 Nodulin-like Gene Family AT1G21140 61.8 3.3e-49 191.8
Chy03g00517 . 7 214 Nodulin-like Gene Family AT3G43630 72.6 1.2e-72 269.6
Chy05g00486 . 9 193 Nodulin-like Gene Family AT3G43630 64.0 1.2e-59 226.5
Chy01g01287 . 30 187 Nodulin-like Gene Family AT3G43630 61.8 1.9e-49 192.6
Chy03g00517 . 4 218 Nodulin-like Gene Family AT3G43660 69.8 1.6e-72 269.2
Chy05g00486 . 9 197 Nodulin-like Gene Family AT3G43660 62.4 2.8e-61 231.9
Chy01g01287 . 26 187 Nodulin-like Gene Family AT3G43660 59.9 6.5e-50 194.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000096 8 10 5 6 7 6 9 8 6 9 4 7 7 13 9 7 7 3 5 7 10 11 6 9 16 8 10 19 10 2 244
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00065 Chy_Chr11 FPKM 4.25484 3.553956 5.647533 4.917103 10.266178 9.367695 9.568595 9.639801 7.467256 8.62115