Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00104 ATGGTTTCTTCAAACCCCATCTCTCTTCTCACATTTCTCACTCTCCTCTTCCTCCTCTCTCCCTCCTCCTCCGTTGCCCCGACAGCGGACATTTGCCAATCCACTACCTCCCCACCCTTCTGCAACTCCTTCCTTCCTAAATCTCCAGACTCCATCCACTCTCATTGTCGCTTCACTCTTCACCAAGCCCTCGCCCATGCACGAACCTTCTTGTCACTCCTCAACGCCCAACTCAACCTCTCCCCCTCCCTCTCTGCCCTCCACGACTGTCGTTGCCTGGCGGAAGCCAACCTCGACTTCTTATCCCAAACTTTCTCCATAGTCAACTCCACTACCACGACACTTCCCTATTACGATGCCCACGAGATGTTATCTTTGATAAGCGCAATTATCACTAACGTAGACACTTGTTATGAAGGGTTGGCGGGTTTGGACTCAGCCGTGGGCTTGGTTGATAAGGTGTTGGAAGCTATCTCTTTTGATAAGAAGCTATATAGTCTGTACCTTTCATTGTTCAAAATGGGTTGGGTTTCTAAGGACTTTAAGGCTCCTACGTTCCCAAAAATGAACCATTTTGGGGCTGGGAAAGGGCAGTTGAAGCTTAAAATGTCGCCCAAAGACCGTGCTTATTATGAGCGCTTGGTCCATAGGAACAAGCCGCCGGGTGCTAGAAGGCTTCTTCAAACCAATTACCAAGATGATGGAATTGTGGTCAATGGCATTGTTGGTGTGGATCAAAATGGAATGTACGACTTCACAAATATCACAGCTGCCATAGCTGCAGCTCCCAACAAGACCACCGTCGCTAAGGGATACTTCTTGATCTTCGTCACCGCTGGCATCTACAACGAGACCGTTTTGGTTCCTAAAGAAAAAAGATACGTTCTGTTGATCGGAGAAGGTAACAACCAAACCATCATCACCGGCAACAAAAACGTCGTTGATGGCTCAACCACTTTCAATAGCGCAACCGTTGTTACATGTGTTAATATATATCAATTAACAAATCTAATGATACACAAATCACTATCATCTGCAGCTGTGGAGGGAACGGGGTTCTTGGGAGTGAACCTAACGATCACCAACACAGCTGGATCTGCCAAACATCAAGCAGTTGCCCTGCGAGTGAGCGCCGACAACGTGACATTATACAACTGCATATTCGAAGGCTATCAAGACACCCTCTACACGCACTCCCTCCGTCAATTCTATAGAGAATGTGACGTCTACGGTACCGTCGATTTCATCTTCGGTAACGCTGCCGTCGTTTTACAAAACTGTAACATATACGCCCGCCTCCCGATGAGTGGCCAGTTCAACGCCCTCACAGCGCAAGGCCGAACCGACCCGAATCAAAACACGGGAACCTCGATCCACAATTGCACCATCAAGGCGACGCCAGAGCTCGCGGCAAGCCCGGCCACGAAGAGCTACTTAGGGCGGCCGTGGAAGCAATATTCTCGAACAGTTTATATGCAATCATTTATTGATTCGTTTATTGATCCTGTAGGGTGGAAGGAGTGGGACGGCACTTTGAATTTGAACACTTCTTATTACGCTGAGTTTAATAACTCCGGCCCGGGCTGCGACACTTCACAGCGGGCTTCGTGGGCGGTTGGTGTCATTAACGCCACCGTTGCTAGTAACTTCACGGTGTCTCAATTCTTGGCCGGAGATAAATGGCTGCCGCCCACCGAGGTGCCTTACACCGGTGGGGCTAGTCATGTCATCCGTTCGACAAAACACGACGACGTACCCCCTTTCACAAAGATGAGTTATGTTCAAAACAAGATTTAG 1797 48.86 MVSSNPISLLTFLTLLFLLSPSSSVAPTADICQSTTSPPFCNSFLPKSPDSIHSHCRFTLHQALAHARTFLSLLNAQLNLSPSLSALHDCRCLAEANLDFLSQTFSIVNSTTTTLPYYDAHEMLSLISAIITNVDTCYEGLAGLDSAVGLVDKVLEAISFDKKLYSLYLSLFKMGWVSKDFKAPTFPKMNHFGAGKGQLKLKMSPKDRAYYERLVHRNKPPGARRLLQTNYQDDGIVVNGIVGVDQNGMYDFTNITAAIAAAPNKTTVAKGYFLIFVTAGIYNETVLVPKEKRYVLLIGEGNNQTIITGNKNVVDGSTTFNSATVVTCVNIYQLTNLMIHKSLSSAAVEGTGFLGVNLTITNTAGSAKHQAVALRVSADNVTLYNCIFEGYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVLQNCNIYARLPMSGQFNALTAQGRTDPNQNTGTSIHNCTIKATPELAASPATKSYLGRPWKQYSRTVYMQSFIDSFIDPVGWKEWDGTLNLNTSYYAEFNNSGPGCDTSQRASWAVGVINATVASNFTVSQFLAGDKWLPPTEVPYTGGASHVIRSTKHDDVPPFTKMSYVQNKI* 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1190301 1194838 + Chy11G186840.1 Chy11g00104 235865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00104 598 SUPERFAMILY Pectin lyase-like 237 571 IPR011050 -
Chy11g00104 598 Pfam Pectinesterase 244 559 IPR000070 GO:0030599|GO:0042545
Chy11g00104 598 CDD PMEI-like_3 31 176 - -
Chy11g00104 598 Pfam Plant invertase/pectin methylesterase inhibitor 30 147 IPR006501 GO:0004857
Chy11g00104 598 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 174 IPR035513 -
Chy11g00104 598 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 174 IPR035513 -
Chy11g00104 598 SMART PMEI_2 22 171 IPR006501 GO:0004857
Chy11g00104 598 Gene3D - 238 573 IPR012334 -
Chy11g00104 598 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Chy11g00104 598 PANTHER PECTINESTERASE 22 573 - -
Chy11g00104 598 PANTHER PECTINESTERASE 22 573 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00215 Chy-Chr4:1957479 Chy11g00104 Chy-Chr11:1190301 0 dispersed
Chy11g00104 Chy-Chr11:1190301 Chy06g00857 Chy-Chr6:6182906 1.45E-123 dispersed
Chy11g00104 Chy-Chr11:1190301 Chy10g01212 Chy-Chr10:16839372 5.71E-151 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00104 K01051 - csv:101216984 1056.2