Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g00181 | ATGGACGATATCGACATTCTCAAATCCACACTCTCCCAATCCGACATGTCGTCCACATTCTTCCCAAACAACACCGCCCCCAATTGTACTCCTCATGTACTTCCAATAATCCCACCCCCAGCTTATTTCTCCGATTACTCCCCGCCGCCCGGAACCTCCTTATTCCAAACCACCCCAGCAATAATCCCCGAAACTCCTGCGCGGCAGAGGCGGAGCGGCGTAAGTGGGGGAGGAATGGCGGCGATGAGAGAGATGATATTTAGAATAGCGGCGATGCAGCCGGTGGAGATTGATCCGGAGGCGATAAAGGCGCCGAAGCGGCGGAATGTGAGAATATCGAAAGATCCACAGAGTGTGGCGGCGAGGCACCGGCGGGAAAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGCTGGTGCCGGGCGGGACGAAGATGGATACGGCGTCGATGCTGGATGAGGCGGTGCATTATGTGAAGTTTTTGAAACGGCAAGTCCAAACACTGGAGCAGGCTGGGTTTAATTATAATAATAATAATAACAACAATAACAATTTTAATAATTTTGTTAATTCCGCAAATTTAAATTACGCTTCTGCCCTTTTCAAGGCTTGTCAAATAATGCCTGCTTCTTTGCAAATGCAGTCATGA | 648 | 49.23 | MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPAIIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNNNNNNFNNFVNSANLNYASALFKACQIMPASLQMQS* | 216 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1770895 | 1771542 | + | Chy11G187610.1 | Chy11g00181 | 235942 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g00181 | 215 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 116 | 171 | IPR036638 | GO:0046983 | |
Chy11g00181 | 215 | Pfam | Helix-loop-helix DNA-binding domain | 121 | 161 | IPR011598 | GO:0046983 | |
Chy11g00181 | 215 | Gene3D | - | 111 | 187 | IPR036638 | GO:0046983 | |
Chy11g00181 | 215 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 112 | 161 | IPR011598 | GO:0046983 | |
Chy11g00181 | 215 | PANTHER | BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN | 73 | 213 | - | - | |
Chy11g00181 | 215 | Coils | Coil | 151 | 171 | - | - | |
Chy11g00181 | 215 | CDD | bHLH_AtIND_like | 113 | 169 | - | - | |
Chy11g00181 | 215 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 73 | 213 | IPR045843 | GO:0003700|GO:0006355 | |
Chy11g00181 | 215 | SMART | finulus | 118 | 167 | IPR011598 | GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy01g02227 | Chy-Chr1:26693448 | Chy11g00181 | Chy-Chr11:1770895 | 2.19E-40 | dispersed | |
Chy02g01048 | Chy-Chr2:7186730 | Chy11g00181 | Chy-Chr11:1770895 | 2.16E-46 | dispersed | |
Chy03g01551 | Chy-Chr3:17678636 | Chy11g00181 | Chy-Chr11:1770895 | 2.22E-52 | dispersed | |
Chy04g00623 | Chy-Chr4:7091255 | Chy11g00181 | Chy-Chr11:1770895 | 1.32E-31 | dispersed | |
Chy08g00620 | Chy-Chr8:14033872 | Chy11g00181 | Chy-Chr11:1770895 | 7.01E-25 | dispersed | |
Chy11g00181 | Chy-Chr11:1770895 | Chy07g00141 | Chy-Chr7:1201275 | 1.92E-42 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18667 | PF00010 | HLH | 8.20E-07 | No_clan | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g00181 | - | - | cmo:103497414 | 303.523 |