Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00181 ATGGACGATATCGACATTCTCAAATCCACACTCTCCCAATCCGACATGTCGTCCACATTCTTCCCAAACAACACCGCCCCCAATTGTACTCCTCATGTACTTCCAATAATCCCACCCCCAGCTTATTTCTCCGATTACTCCCCGCCGCCCGGAACCTCCTTATTCCAAACCACCCCAGCAATAATCCCCGAAACTCCTGCGCGGCAGAGGCGGAGCGGCGTAAGTGGGGGAGGAATGGCGGCGATGAGAGAGATGATATTTAGAATAGCGGCGATGCAGCCGGTGGAGATTGATCCGGAGGCGATAAAGGCGCCGAAGCGGCGGAATGTGAGAATATCGAAAGATCCACAGAGTGTGGCGGCGAGGCACCGGCGGGAAAGGATTAGCCAGAAAATTAGGATTCTGCAGCGGCTGGTGCCGGGCGGGACGAAGATGGATACGGCGTCGATGCTGGATGAGGCGGTGCATTATGTGAAGTTTTTGAAACGGCAAGTCCAAACACTGGAGCAGGCTGGGTTTAATTATAATAATAATAATAACAACAATAACAATTTTAATAATTTTGTTAATTCCGCAAATTTAAATTACGCTTCTGCCCTTTTCAAGGCTTGTCAAATAATGCCTGCTTCTTTGCAAATGCAGTCATGA 648 49.23 MDDIDILKSTLSQSDMSSTFFPNNTAPNCTPHVLPIIPPPAYFSDYSPPPGTSLFQTTPAIIPETPARQRRSGVSGGGMAAMREMIFRIAAMQPVEIDPEAIKAPKRRNVRISKDPQSVAARHRRERISQKIRILQRLVPGGTKMDTASMLDEAVHYVKFLKRQVQTLEQAGFNYNNNNNNNNNFNNFVNSANLNYASALFKACQIMPASLQMQS* 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1770895 1771542 + Chy11G187610.1 Chy11g00181 235942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00181 215 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 171 IPR036638 GO:0046983
Chy11g00181 215 Pfam Helix-loop-helix DNA-binding domain 121 161 IPR011598 GO:0046983
Chy11g00181 215 Gene3D - 111 187 IPR036638 GO:0046983
Chy11g00181 215 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 161 IPR011598 GO:0046983
Chy11g00181 215 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 73 213 - -
Chy11g00181 215 Coils Coil 151 171 - -
Chy11g00181 215 CDD bHLH_AtIND_like 113 169 - -
Chy11g00181 215 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 73 213 IPR045843 GO:0003700|GO:0006355
Chy11g00181 215 SMART finulus 118 167 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02227 Chy-Chr1:26693448 Chy11g00181 Chy-Chr11:1770895 2.19E-40 dispersed
Chy02g01048 Chy-Chr2:7186730 Chy11g00181 Chy-Chr11:1770895 2.16E-46 dispersed
Chy03g01551 Chy-Chr3:17678636 Chy11g00181 Chy-Chr11:1770895 2.22E-52 dispersed
Chy04g00623 Chy-Chr4:7091255 Chy11g00181 Chy-Chr11:1770895 1.32E-31 dispersed
Chy08g00620 Chy-Chr8:14033872 Chy11g00181 Chy-Chr11:1770895 7.01E-25 dispersed
Chy11g00181 Chy-Chr11:1770895 Chy07g00141 Chy-Chr7:1201275 1.92E-42 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18667 PF00010 HLH 8.20E-07 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00181 - - cmo:103497414 303.523