Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00210 ATGGATATTTTGGATCCGATCTTGATGTTTGGTGGTGCAATGGGGGTATCATTACTTAAAGTGCTTCTTAGGCATATATCATCATTTCTTCAACTTTCATCTTCTGACTACATAAATTTACAACCAACTTTGAAGTACTACCATAAAATAGAAGGGGCCTTGAAACTATTAAGACCAATACTGGATGCGGTTGTTGATTCAGATATAGCTTCTGATGAAGAGCTTACTCAGGCATTTAAAGAACTTGATCACTCAGTGGATGAACTAAGGGTGCTCTTTGAAAATTGGCAACCGTTGTCAAGTAAAGTATACTTTGTATTGCAAAGTGAAACATTGATATCAAAGATTGGGAAATTTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAGCTGAGTTCAAAATCTCTTGAGCACTGCGTACAAAAAATTAAGAATATTGGAAAGGAAGAAATATCTTCCGTTATCAAAGATGCCATAAGGAATCAAGTAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTTAAACTTGCGGATTCCCTAAGCTTGAGATCAAATCAGGCGATCTTAATTGAGGCTGTGGCCCTTGAAAAATTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGAAGAAGCAGAGGACATTGATCAAATGATTGGTCTTGTAACCCGTATGCATGAACGACTTATTATGATAAAGCAGTCCCAAAGTTCTAGTCCTGTACCAATACCTCCTGACTTCTGCTGTCCTCTTTCTCTAGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGAGTATTTATTAAAAATTGGATTGATCAGGGGCTCAACGTTTGCCCAAAAACTAGACAGACGTTGGTTCACACAAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTGTCTGATCCCTCCAAGTCAGTGAACTTAAACCAACTTTCTCCTCTTCTAGTTGGGAGCTTTGAGCCTGATACCCATCGAGAACCCCTTTTTCTTCATTCCCCTGGCTACCAACCAATGTCTCCTCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAATTTGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCCTCCACTCTCTGTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAAGGAGCAATTGAAGTTGATAGACTGTTGCTTTCAAGTTCAGAAGATCAAATGGCCAAACTGGAAGAAAATGGTTGTGATCCGGTTGGTAAACCATCAACGTCACCATCTAGAACCAATGTTCTAAATTCCTGTGGTGAGGATGAACCGTCTCATAGTCATAACAGGTCTTCCTCCACCTCTAGTGGAGTCTCAAATGCTAATCACTCTCGGGGAACTTCAGGAGAAGCCAATGAAGCAACACACTTGTCAACCAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCCCAACAACCAACCACAGAGAACCAGAGCGGGAGCATCCACCCAGACTAGCTGACCACCCAAGGCCTCGAGGTAATACGATGTGGCTCCGGCCGTCAGAGAGGTTTGCCTCTAGAATAATTACATCATCTGCTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAAAGCAGTTCACTTGACACTTTAAGAGGTGCTACAGCTGAATTGCGGCTGCTGGCCAAGCATAATATGGATAACCGGATAGTAATCGCCCAATGTGGGGCCATTGATTATTTGGTTGGTTTGCTCCTCTCCGAAGACTCTAAGATCCAGGAGAATGCTGTGACATCACTTCTAAACTTATCCATCAATGATAATAACAAAAGCGCAATTGCCCAGGCTAATGCCATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCAAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCTCTGGTTGAATTATTGGGCAATGGAACTCCAAGGGGAAAGAAGGATGCAGCTACAGCGCTGTTTAATTTGTCAATATTCCATGAGAACAAAGCTAGAATTGTACAGGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACGATTCCTGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATTCCCGTTCTGGTTGAAGTCGTTGAGTTGGGTTCTGCAAGAGGAAAAGAAAATGCGGCAGCAGCACTATTGCAGCTTTGCACAACAAGCAATAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCCGTTCCACCATTAGTGGCGTTGTCTCAATCTGGCACTGCTAGAGCTAAAGAAAAGGCCCAAGCACTTCTAAGCCATTTCAGAAGCCAGAGACATGGCAATTCAGGAAGAGGGTAA 2565 43.47 MDILDPILMFGGAMGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGALKLLRPILDAVVDSDIASDEELTQAFKELDHSVDELRVLFENWQPLSSKVYFVLQSETLISKIGKFSLDIFQLLQSSNENLPEELSSKSLEHCVQKIKNIGKEEISSVIKDAIRNQVDGIAPSSDVLVKLADSLSLRSNQAILIEAVALEKLKESAEQAENTEEAEDIDQMIGLVTRMHERLIMIKQSQSSSPVPIPPDFCCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQLSPLLVGSFEPDTHREPLFLHSPGYQPMSPQSTRSAGSGKNLNSLGGTHRDGSSSLLLHSLSEDSLSNDAGDEGAIEVDRLLLSSSEDQMAKLEENGCDPVGKPSTSPSRTNVLNSCGEDEPSHSHNRSSSTSSGVSNANHSRGTSGEANEATHLSTNLTGYGSDAAGESKSEPLAAATPTTNHREPEREHPPRLADHPRPRGNTMWLRPSERFASRIITSSANETRPDLSAIEAQVQKVVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCGAIDYLVGLLLSEDSKIQENAVTSLLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG* 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1971633 1978766 + Chy11G187900.1 Chy11g00210 235971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00210 854 SMART Ubox_2 252 315 IPR003613 GO:0004842|GO:0016567
Chy11g00210 854 Coils Coil 199 222 - -
Chy11g00210 854 Gene3D - 549 850 IPR011989 -
Chy11g00210 854 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 21 850 - -
Chy11g00210 854 SUPERFAMILY RING/U-box 238 325 - -
Chy11g00210 854 MobiDBLite consensus disorder prediction 350 389 - -
Chy11g00210 854 MobiDBLite consensus disorder prediction 461 499 - -
Chy11g00210 854 MobiDBLite consensus disorder prediction 429 541 - -
Chy11g00210 854 MobiDBLite consensus disorder prediction 436 454 - -
Chy11g00210 854 ProSiteProfiles U-box domain profile. 248 322 IPR003613 GO:0004842|GO:0016567
Chy11g00210 854 SMART arm_5 682 722 IPR000225 GO:0005515
Chy11g00210 854 SMART arm_5 763 803 IPR000225 GO:0005515
Chy11g00210 854 SMART arm_5 805 845 IPR000225 GO:0005515
Chy11g00210 854 SMART arm_5 723 762 IPR000225 GO:0005515
Chy11g00210 854 SMART arm_5 641 681 IPR000225 GO:0005515
Chy11g00210 854 SMART arm_5 600 640 IPR000225 GO:0005515
Chy11g00210 854 Pfam Armadillo/beta-catenin-like repeat 684 721 IPR000225 GO:0005515
Chy11g00210 854 Pfam Armadillo/beta-catenin-like repeat 602 639 IPR000225 GO:0005515
Chy11g00210 854 Pfam Armadillo/beta-catenin-like repeat 641 680 IPR000225 GO:0005515
Chy11g00210 854 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 734 775 IPR000225 GO:0005515
Chy11g00210 854 PANTHER U BOX DOMAIN-CONTAINING 21 850 - -
Chy11g00210 854 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 611 653 IPR000225 GO:0005515
Chy11g00210 854 MobiDBLite consensus disorder prediction 359 389 - -
Chy11g00210 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 323 IPR013083 -
Chy11g00210 854 SUPERFAMILY ARM repeat 570 843 IPR016024 -
Chy11g00210 854 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 693 735 IPR000225 GO:0005515
Chy11g00210 854 MobiDBLite consensus disorder prediction 517 532 - -
Chy11g00210 854 Pfam U-box domain 249 319 IPR003613 GO:0004842|GO:0016567
Chy11g00210 854 CDD RING-Ubox_PUB 253 295 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01494 Chy-Chr1:20672947 Chy11g00210 Chy-Chr11:1971633 3.86E-64 dispersed
Chy01g01496 Chy-Chr1:20691328 Chy11g00210 Chy-Chr11:1971633 1.25E-06 dispersed
Chy01g01499 Chy-Chr1:20703156 Chy11g00210 Chy-Chr11:1971633 7.48E-08 dispersed
Chy02g00869 Chy-Chr2:5586841 Chy11g00210 Chy-Chr11:1971633 9.89E-08 dispersed
Chy02g00870 Chy-Chr2:5592397 Chy11g00210 Chy-Chr11:1971633 4.04E-06 dispersed
Chy02g02552 Chy-Chr2:28783066 Chy11g00210 Chy-Chr11:1971633 2.78E-09 dispersed
Chy03g01589 Chy-Chr3:17917046 Chy11g00210 Chy-Chr11:1971633 1.99E-83 dispersed
Chy04g00352 Chy-Chr4:3125441 Chy11g00210 Chy-Chr11:1971633 1.29E-18 dispersed
Chy04g00818 Chy-Chr4:10652116 Chy11g00210 Chy-Chr11:1971633 1.97E-12 dispersed
Chy11g00210 Chy-Chr11:1971633 Chy11g01242 Chy-Chr11:18538898 5.37E-10 dispersed
Chy12g01293 Chy-Chr12:17396405 Chy11g00210 Chy-Chr11:1971633 1.70E-10 dispersed
Chy11g00210 Chy-Chr11:1971633 Chy12g00185 Chy-Chr12:2245357 8.07E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00210 - - csv:101212423 1555.42