Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g00210 | ATGGATATTTTGGATCCGATCTTGATGTTTGGTGGTGCAATGGGGGTATCATTACTTAAAGTGCTTCTTAGGCATATATCATCATTTCTTCAACTTTCATCTTCTGACTACATAAATTTACAACCAACTTTGAAGTACTACCATAAAATAGAAGGGGCCTTGAAACTATTAAGACCAATACTGGATGCGGTTGTTGATTCAGATATAGCTTCTGATGAAGAGCTTACTCAGGCATTTAAAGAACTTGATCACTCAGTGGATGAACTAAGGGTGCTCTTTGAAAATTGGCAACCGTTGTCAAGTAAAGTATACTTTGTATTGCAAAGTGAAACATTGATATCAAAGATTGGGAAATTTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAGCTGAGTTCAAAATCTCTTGAGCACTGCGTACAAAAAATTAAGAATATTGGAAAGGAAGAAATATCTTCCGTTATCAAAGATGCCATAAGGAATCAAGTAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTTAAACTTGCGGATTCCCTAAGCTTGAGATCAAATCAGGCGATCTTAATTGAGGCTGTGGCCCTTGAAAAATTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGAAGAAGCAGAGGACATTGATCAAATGATTGGTCTTGTAACCCGTATGCATGAACGACTTATTATGATAAAGCAGTCCCAAAGTTCTAGTCCTGTACCAATACCTCCTGACTTCTGCTGTCCTCTTTCTCTAGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGAGTATTTATTAAAAATTGGATTGATCAGGGGCTCAACGTTTGCCCAAAAACTAGACAGACGTTGGTTCACACAAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTGTCTGATCCCTCCAAGTCAGTGAACTTAAACCAACTTTCTCCTCTTCTAGTTGGGAGCTTTGAGCCTGATACCCATCGAGAACCCCTTTTTCTTCATTCCCCTGGCTACCAACCAATGTCTCCTCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAATTTGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCCTCCACTCTCTGTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAAGGAGCAATTGAAGTTGATAGACTGTTGCTTTCAAGTTCAGAAGATCAAATGGCCAAACTGGAAGAAAATGGTTGTGATCCGGTTGGTAAACCATCAACGTCACCATCTAGAACCAATGTTCTAAATTCCTGTGGTGAGGATGAACCGTCTCATAGTCATAACAGGTCTTCCTCCACCTCTAGTGGAGTCTCAAATGCTAATCACTCTCGGGGAACTTCAGGAGAAGCCAATGAAGCAACACACTTGTCAACCAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCCCAACAACCAACCACAGAGAACCAGAGCGGGAGCATCCACCCAGACTAGCTGACCACCCAAGGCCTCGAGGTAATACGATGTGGCTCCGGCCGTCAGAGAGGTTTGCCTCTAGAATAATTACATCATCTGCTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAAAGCAGTTCACTTGACACTTTAAGAGGTGCTACAGCTGAATTGCGGCTGCTGGCCAAGCATAATATGGATAACCGGATAGTAATCGCCCAATGTGGGGCCATTGATTATTTGGTTGGTTTGCTCCTCTCCGAAGACTCTAAGATCCAGGAGAATGCTGTGACATCACTTCTAAACTTATCCATCAATGATAATAACAAAAGCGCAATTGCCCAGGCTAATGCCATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCAAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCTCTGGTTGAATTATTGGGCAATGGAACTCCAAGGGGAAAGAAGGATGCAGCTACAGCGCTGTTTAATTTGTCAATATTCCATGAGAACAAAGCTAGAATTGTACAGGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACGATTCCTGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATTCCCGTTCTGGTTGAAGTCGTTGAGTTGGGTTCTGCAAGAGGAAAAGAAAATGCGGCAGCAGCACTATTGCAGCTTTGCACAACAAGCAATAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCCGTTCCACCATTAGTGGCGTTGTCTCAATCTGGCACTGCTAGAGCTAAAGAAAAGGCCCAAGCACTTCTAAGCCATTTCAGAAGCCAGAGACATGGCAATTCAGGAAGAGGGTAA | 2565 | 43.47 | MDILDPILMFGGAMGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGALKLLRPILDAVVDSDIASDEELTQAFKELDHSVDELRVLFENWQPLSSKVYFVLQSETLISKIGKFSLDIFQLLQSSNENLPEELSSKSLEHCVQKIKNIGKEEISSVIKDAIRNQVDGIAPSSDVLVKLADSLSLRSNQAILIEAVALEKLKESAEQAENTEEAEDIDQMIGLVTRMHERLIMIKQSQSSSPVPIPPDFCCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQLSPLLVGSFEPDTHREPLFLHSPGYQPMSPQSTRSAGSGKNLNSLGGTHRDGSSSLLLHSLSEDSLSNDAGDEGAIEVDRLLLSSSEDQMAKLEENGCDPVGKPSTSPSRTNVLNSCGEDEPSHSHNRSSSTSSGVSNANHSRGTSGEANEATHLSTNLTGYGSDAAGESKSEPLAAATPTTNHREPEREHPPRLADHPRPRGNTMWLRPSERFASRIITSSANETRPDLSAIEAQVQKVVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCGAIDYLVGLLLSEDSKIQENAVTSLLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG* | 855 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1971633 | 1978766 | + | Chy11G187900.1 | Chy11g00210 | 235971 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g00210 | 854 | SMART | Ubox_2 | 252 | 315 | IPR003613 | GO:0004842|GO:0016567 | |
Chy11g00210 | 854 | Coils | Coil | 199 | 222 | - | - | |
Chy11g00210 | 854 | Gene3D | - | 549 | 850 | IPR011989 | - | |
Chy11g00210 | 854 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 21 | 850 | - | - | |
Chy11g00210 | 854 | SUPERFAMILY | RING/U-box | 238 | 325 | - | - | |
Chy11g00210 | 854 | MobiDBLite | consensus disorder prediction | 350 | 389 | - | - | |
Chy11g00210 | 854 | MobiDBLite | consensus disorder prediction | 461 | 499 | - | - | |
Chy11g00210 | 854 | MobiDBLite | consensus disorder prediction | 429 | 541 | - | - | |
Chy11g00210 | 854 | MobiDBLite | consensus disorder prediction | 436 | 454 | - | - | |
Chy11g00210 | 854 | ProSiteProfiles | U-box domain profile. | 248 | 322 | IPR003613 | GO:0004842|GO:0016567 | |
Chy11g00210 | 854 | SMART | arm_5 | 682 | 722 | IPR000225 | GO:0005515 | |
Chy11g00210 | 854 | SMART | arm_5 | 763 | 803 | IPR000225 | GO:0005515 | |
Chy11g00210 | 854 | SMART | arm_5 | 805 | 845 | IPR000225 | GO:0005515 | |
Chy11g00210 | 854 | SMART | arm_5 | 723 | 762 | IPR000225 | GO:0005515 | |
Chy11g00210 | 854 | SMART | arm_5 | 641 | 681 | IPR000225 | GO:0005515 | |
Chy11g00210 | 854 | SMART | arm_5 | 600 | 640 | IPR000225 | GO:0005515 | |
Chy11g00210 | 854 | Pfam | Armadillo/beta-catenin-like repeat | 684 | 721 | IPR000225 | GO:0005515 | |
Chy11g00210 | 854 | Pfam | Armadillo/beta-catenin-like repeat | 602 | 639 | IPR000225 | GO:0005515 | |
Chy11g00210 | 854 | Pfam | Armadillo/beta-catenin-like repeat | 641 | 680 | IPR000225 | GO:0005515 | |
Chy11g00210 | 854 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 734 | 775 | IPR000225 | GO:0005515 | |
Chy11g00210 | 854 | PANTHER | U BOX DOMAIN-CONTAINING | 21 | 850 | - | - | |
Chy11g00210 | 854 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 611 | 653 | IPR000225 | GO:0005515 | |
Chy11g00210 | 854 | MobiDBLite | consensus disorder prediction | 359 | 389 | - | - | |
Chy11g00210 | 854 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 248 | 323 | IPR013083 | - | |
Chy11g00210 | 854 | SUPERFAMILY | ARM repeat | 570 | 843 | IPR016024 | - | |
Chy11g00210 | 854 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 693 | 735 | IPR000225 | GO:0005515 | |
Chy11g00210 | 854 | MobiDBLite | consensus disorder prediction | 517 | 532 | - | - | |
Chy11g00210 | 854 | Pfam | U-box domain | 249 | 319 | IPR003613 | GO:0004842|GO:0016567 | |
Chy11g00210 | 854 | CDD | RING-Ubox_PUB | 253 | 295 | IPR045210 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy01g01494 | Chy-Chr1:20672947 | Chy11g00210 | Chy-Chr11:1971633 | 3.86E-64 | dispersed | |
Chy01g01496 | Chy-Chr1:20691328 | Chy11g00210 | Chy-Chr11:1971633 | 1.25E-06 | dispersed | |
Chy01g01499 | Chy-Chr1:20703156 | Chy11g00210 | Chy-Chr11:1971633 | 7.48E-08 | dispersed | |
Chy02g00869 | Chy-Chr2:5586841 | Chy11g00210 | Chy-Chr11:1971633 | 9.89E-08 | dispersed | |
Chy02g00870 | Chy-Chr2:5592397 | Chy11g00210 | Chy-Chr11:1971633 | 4.04E-06 | dispersed | |
Chy02g02552 | Chy-Chr2:28783066 | Chy11g00210 | Chy-Chr11:1971633 | 2.78E-09 | dispersed | |
Chy03g01589 | Chy-Chr3:17917046 | Chy11g00210 | Chy-Chr11:1971633 | 1.99E-83 | dispersed | |
Chy04g00352 | Chy-Chr4:3125441 | Chy11g00210 | Chy-Chr11:1971633 | 1.29E-18 | dispersed | |
Chy04g00818 | Chy-Chr4:10652116 | Chy11g00210 | Chy-Chr11:1971633 | 1.97E-12 | dispersed | |
Chy11g00210 | Chy-Chr11:1971633 | Chy11g01242 | Chy-Chr11:18538898 | 5.37E-10 | dispersed | |
Chy12g01293 | Chy-Chr12:17396405 | Chy11g00210 | Chy-Chr11:1971633 | 1.70E-10 | dispersed | |
Chy11g00210 | Chy-Chr11:1971633 | Chy12g00185 | Chy-Chr12:2245357 | 8.07E-09 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g00210 | - | - | csv:101212423 | 1555.42 |