Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00210 ATGGATATTTTGGATCCGATCTTGATGTTTGGTGGTGCAATGGGGGTATCATTACTTAAAGTGCTTCTTAGGCATATATCATCATTTCTTCAACTTTCATCTTCTGACTACATAAATTTACAACCAACTTTGAAGTACTACCATAAAATAGAAGGGGCCTTGAAACTATTAAGACCAATACTGGATGCGGTTGTTGATTCAGATATAGCTTCTGATGAAGAGCTTACTCAGGCATTTAAAGAACTTGATCACTCAGTGGATGAACTAAGGGTGCTCTTTGAAAATTGGCAACCGTTGTCAAGTAAAGTATACTTTGTATTGCAAAGTGAAACATTGATATCAAAGATTGGGAAATTTAGCTTGGATATATTCCAGCTTCTTCAGTCTTCAAATGAAAATCTTCCGGAGGAGCTGAGTTCAAAATCTCTTGAGCACTGCGTACAAAAAATTAAGAATATTGGAAAGGAAGAAATATCTTCCGTTATCAAAGATGCCATAAGGAATCAAGTAGATGGCATTGCTCCCAGCTCAGATGTTTTGGTTAAACTTGCGGATTCCCTAAGCTTGAGATCAAATCAGGCGATCTTAATTGAGGCTGTGGCCCTTGAAAAATTGAAAGAGAGTGCAGAACAAGCTGAAAATACTGAAGAAGCAGAGGACATTGATCAAATGATTGGTCTTGTAACCCGTATGCATGAACGACTTATTATGATAAAGCAGTCCCAAAGTTCTAGTCCTGTACCAATACCTCCTGACTTCTGCTGTCCTCTTTCTCTAGAACTAATGACAGATCCAGTTATTGTAGCATCAGGGCAGACCTATGAGCGAGTATTTATTAAAAATTGGATTGATCAGGGGCTCAACGTTTGCCCAAAAACTAGACAGACGTTGGTTCACACAAATCTTATACCTAATTACACTGTTAAGGCTCTGATTGCAAACTGGTGTGACACAAACAATGTGAAATTGTCTGATCCCTCCAAGTCAGTGAACTTAAACCAACTTTCTCCTCTTCTAGTTGGGAGCTTTGAGCCTGATACCCATCGAGAACCCCTTTTTCTTCATTCCCCTGGCTACCAACCAATGTCTCCTCAGTCAACCAGGTCTGCAGGTTCAGGAAAGAATTTGAACTCACTTGGTGGAACCCATCGAGATGGAAGTTCTTCTTTGCTCCTCCACTCTCTGTCTGAGGATTCCTTGTCAAATGATGCTGGAGATGAAGGAGCAATTGAAGTTGATAGACTGTTGCTTTCAAGTTCAGAAGATCAAATGGCCAAACTGGAAGAAAATGGTTGTGATCCGGTTGGTAAACCATCAACGTCACCATCTAGAACCAATGTTCTAAATTCCTGTGGTGAGGATGAACCGTCTCATAGTCATAACAGGTCTTCCTCCACCTCTAGTGGAGTCTCAAATGCTAATCACTCTCGGGGAACTTCAGGAGAAGCCAATGAAGCAACACACTTGTCAACCAATCTGACAGGTTATGGCAGTGATGCTGCTGGGGAGAGTAAATCAGAGCCCTTGGCTGCTGCTACCCCAACAACCAACCACAGAGAACCAGAGCGGGAGCATCCACCCAGACTAGCTGACCACCCAAGGCCTCGAGGTAATACGATGTGGCTCCGGCCGTCAGAGAGGTTTGCCTCTAGAATAATTACATCATCTGCTAATGAGACAAGGCCGGATCTTTCTGCTATTGAAGCACAAGTTCAGAAGGTGGTAGAGGAATTAAAAAGCAGTTCACTTGACACTTTAAGAGGTGCTACAGCTGAATTGCGGCTGCTGGCCAAGCATAATATGGATAACCGGATAGTAATCGCCCAATGTGGGGCCATTGATTATTTGGTTGGTTTGCTCCTCTCCGAAGACTCTAAGATCCAGGAGAATGCTGTGACATCACTTCTAAACTTATCCATCAATGATAATAACAAAAGCGCAATTGCCCAGGCTAATGCCATTGAACCTTTGATTCATGTTCTTAAAACTGGGAGCCCAGAAGCAAAGGAGAACTCAGCAGCAACTCTTTTTAGCCTCTCAGTGATTGAAGAGAACAAGGTCAAAATTGGAAGGTCTGGAGCAATAGGACCTCTGGTTGAATTATTGGGCAATGGAACTCCAAGGGGAAAGAAGGATGCAGCTACAGCGCTGTTTAATTTGTCAATATTCCATGAGAACAAAGCTAGAATTGTACAGGCTGGAGCTGTGAGGCATCTTGTGGAGTTGATGGACCCAGCAGCAGGAATGGTTGACAAGGCTGTTGCTGTGTTGGCAAATCTTGCCACGATTCCTGAGGGTAGGTCTGCAATTGGCCAGGAAGGTGGAATTCCCGTTCTGGTTGAAGTCGTTGAGTTGGGTTCTGCAAGAGGAAAAGAAAATGCGGCAGCAGCACTATTGCAGCTTTGCACAACAAGCAATAGGCATTGCAGTATGGTGCTCCAAGAAGGAGCCGTTCCACCATTAGTGGCGTTGTCTCAATCTGGCACTGCTAGAGCTAAAGAAAAGGCCCAAGCACTTCTAAGCCATTTCAGAAGCCAGAGACATGGCAATTCAGGAAGAGGGTAA 2565 43.47 MDILDPILMFGGAMGVSLLKVLLRHISSFLQLSSSDYINLQPTLKYYHKIEGALKLLRPILDAVVDSDIASDEELTQAFKELDHSVDELRVLFENWQPLSSKVYFVLQSETLISKIGKFSLDIFQLLQSSNENLPEELSSKSLEHCVQKIKNIGKEEISSVIKDAIRNQVDGIAPSSDVLVKLADSLSLRSNQAILIEAVALEKLKESAEQAENTEEAEDIDQMIGLVTRMHERLIMIKQSQSSSPVPIPPDFCCPLSLELMTDPVIVASGQTYERVFIKNWIDQGLNVCPKTRQTLVHTNLIPNYTVKALIANWCDTNNVKLSDPSKSVNLNQLSPLLVGSFEPDTHREPLFLHSPGYQPMSPQSTRSAGSGKNLNSLGGTHRDGSSSLLLHSLSEDSLSNDAGDEGAIEVDRLLLSSSEDQMAKLEENGCDPVGKPSTSPSRTNVLNSCGEDEPSHSHNRSSSTSSGVSNANHSRGTSGEANEATHLSTNLTGYGSDAAGESKSEPLAAATPTTNHREPEREHPPRLADHPRPRGNTMWLRPSERFASRIITSSANETRPDLSAIEAQVQKVVEELKSSSLDTLRGATAELRLLAKHNMDNRIVIAQCGAIDYLVGLLLSEDSKIQENAVTSLLNLSINDNNKSAIAQANAIEPLIHVLKTGSPEAKENSAATLFSLSVIEENKVKIGRSGAIGPLVELLGNGTPRGKKDAATALFNLSIFHENKARIVQAGAVRHLVELMDPAAGMVDKAVAVLANLATIPEGRSAIGQEGGIPVLVEVVELGSARGKENAAAALLQLCTTSNRHCSMVLQEGAVPPLVALSQSGTARAKEKAQALLSHFRSQRHGNSGRG* 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1971633 1978766 + Chy11G187900.1 Chy11g00210 235971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00210 854 SMART Ubox_2 252 315 IPR003613 GO:0004842|GO:0016567
Chy11g00210 854 Coils Coil 199 222 - -
Chy11g00210 854 Gene3D - 549 850 IPR011989 -
Chy11g00210 854 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 21 850 - -
Chy11g00210 854 SUPERFAMILY RING/U-box 238 325 - -
Chy11g00210 854 MobiDBLite consensus disorder prediction 350 389 - -
Chy11g00210 854 MobiDBLite consensus disorder prediction 461 499 - -
Chy11g00210 854 MobiDBLite consensus disorder prediction 429 541 - -
Chy11g00210 854 MobiDBLite consensus disorder prediction 436 454 - -
Chy11g00210 854 ProSiteProfiles U-box domain profile. 248 322 IPR003613 GO:0004842|GO:0016567
Chy11g00210 854 SMART arm_5 682 722 IPR000225 GO:0005515
Chy11g00210 854 SMART arm_5 763 803 IPR000225 GO:0005515
Chy11g00210 854 SMART arm_5 805 845 IPR000225 GO:0005515
Chy11g00210 854 SMART arm_5 723 762 IPR000225 GO:0005515
Chy11g00210 854 SMART arm_5 641 681 IPR000225 GO:0005515
Chy11g00210 854 SMART arm_5 600 640 IPR000225 GO:0005515
Chy11g00210 854 Pfam Armadillo/beta-catenin-like repeat 684 721 IPR000225 GO:0005515
Chy11g00210 854 Pfam Armadillo/beta-catenin-like repeat 602 639 IPR000225 GO:0005515
Chy11g00210 854 Pfam Armadillo/beta-catenin-like repeat 641 680 IPR000225 GO:0005515
Chy11g00210 854 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 734 775 IPR000225 GO:0005515
Chy11g00210 854 PANTHER U BOX DOMAIN-CONTAINING 21 850 - -
Chy11g00210 854 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 611 653 IPR000225 GO:0005515
Chy11g00210 854 MobiDBLite consensus disorder prediction 359 389 - -
Chy11g00210 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 248 323 IPR013083 -
Chy11g00210 854 SUPERFAMILY ARM repeat 570 843 IPR016024 -
Chy11g00210 854 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 693 735 IPR000225 GO:0005515
Chy11g00210 854 MobiDBLite consensus disorder prediction 517 532 - -
Chy11g00210 854 Pfam U-box domain 249 319 IPR003613 GO:0004842|GO:0016567
Chy11g00210 854 CDD RING-Ubox_PUB 253 295 IPR045210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00210 - - - csv:101212423 1555.42
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01494 Chy-Chr1:20672947 Chy11g00210 Chy-Chr11:1971633 3.86E-64 dispersed
Chy01g01496 Chy-Chr1:20691328 Chy11g00210 Chy-Chr11:1971633 1.25E-06 dispersed
Chy01g01499 Chy-Chr1:20703156 Chy11g00210 Chy-Chr11:1971633 7.48E-08 dispersed
Chy02g00869 Chy-Chr2:5586841 Chy11g00210 Chy-Chr11:1971633 9.89E-08 dispersed
Chy02g00870 Chy-Chr2:5592397 Chy11g00210 Chy-Chr11:1971633 4.04E-06 dispersed
Chy02g02552 Chy-Chr2:28783066 Chy11g00210 Chy-Chr11:1971633 2.78E-09 dispersed
Chy03g01589 Chy-Chr3:17917046 Chy11g00210 Chy-Chr11:1971633 1.99E-83 dispersed
Chy04g00352 Chy-Chr4:3125441 Chy11g00210 Chy-Chr11:1971633 1.29E-18 dispersed
Chy04g00818 Chy-Chr4:10652116 Chy11g00210 Chy-Chr11:1971633 1.97E-12 dispersed
Chy11g00210 Chy-Chr11:1971633 Chy11g01242 Chy-Chr11:18538898 5.37E-10 dispersed
Chy12g01293 Chy-Chr12:17396405 Chy11g00210 Chy-Chr11:1971633 1.70E-10 dispersed
Chy11g00210 Chy-Chr11:1971633 Chy12g00185 Chy-Chr12:2245357 8.07E-09 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
Chy04g01575 . 1 1043 U-box Gene Family AT5G15400 75.7 0.0e+00 1568.1
Chy11g00210 . 209 855 U-box Gene Family AT2G23140 66.0 6.6e-120 428.3
Chy03g01664 . 1 800 U-box Gene Family AT1G24330 55.4 5.2e-228 787.7
Chy10g00794 . 25 765 U-box Gene Family AT1G24330 57.7 4.7e-221 764.6
Chy03g01664 . 1 799 U-box Gene Family AT1G67530 55.2 3.5e-224 775.0
Chy10g00794 . 25 765 U-box Gene Family AT1G67530 56.3 7.9e-216 747.3
Chy02g00356 . 1 362 U-box Gene Family AT4G21350 62.1 1.0e-120 430.3
Chy04g00817 . 135 462 U-box Gene Family AT3G07360 54.4 2.2e-79 292.7
Chy09g00867 . 251 456 U-box Gene Family AT1G71020 53.1 3.1e-53 206.5
Chy10g01301 . 210 412 U-box Gene Family AT1G71020 51.9 8.7e-48 188.3
Chy12g00185 CCT 259 428 U-box Gene Family AT1G71020 57.8 1.5e-47 187.6
Chy12g00185 CCT 94 643 U-box Gene Family AT2G28830 57.9 1.7e-98 357.1
Chy12g00185 CCT 1 635 U-box Gene Family AT3G46510 68.3 2.0e-159 559.7
Chy11g01242 CCT 11 671 U-box Gene Family AT3G46510 64.0 8.6e-155 544.3
Chy10g01301 . 5 620 U-box Gene Family AT3G46510 58.5 1.3e-123 440.7
Chy10g01301 . 9 619 U-box Gene Family AT3G54850 69.1 1.2e-166 583.6
Chy11g01242 CCT 13 650 U-box Gene Family AT3G54850 55.2 2.9e-112 402.9
Chy12g00185 CCT 9 632 U-box Gene Family AT3G54850 55.2 1.1e-103 374.4
Chy11g00773 . 92 644 U-box Gene Family AT5G42340 64.6 4.9e-118 422.2
Chy08g00584 . 9 671 U-box Gene Family AT5G01830 57.9 2.1e-196 682.6
Chy12g00056 . 1 714 U-box Gene Family AT1G29340 67.3 7.5e-245 843.6
Chy06g01338 . 27 443 U-box Gene Family AT5G37490 51.6 1.3e-111 400.2
Chy08g00534 . 4 423 U-box Gene Family AT3G52450 50.8 5.2e-116 414.8
Chy05g00202 CCT,ECH 13 412 U-box Gene Family AT2G35930 51.9 1.4e-115 413.3
Chy08g00534 . 4 423 U-box Gene Family AT2G35930 50.4 5.4e-115 411.4
Chy04g01856 . 7 321 U-box Gene Family AT2G35930 50.9 3.7e-79 292.4
Chy06g01075 . 9 424 U-box Gene Family AT3G19380 64.2 2.7e-146 515.4
Chy06g01075 . 1 424 U-box Gene Family AT1G49780 64.3 2.1e-151 532.3
Chy02g01040 . 1 407 U-box Gene Family AT5G64660 54.7 1.0e-121 433.7
Chy02g01040 . 1 407 U-box Gene Family AT5G09800 50.8 2.0e-106 382.9
Chy07g00203 . 1 445 U-box Gene Family AT3G49810 63.2 1.8e-151 532.7
Chy03g01606 . 1 449 U-box Gene Family AT3G49810 61.0 2.6e-147 518.8
Chy03g01606 . 1 449 U-box Gene Family AT5G65920 61.5 1.9e-145 512.7
Chy07g00203 . 1 445 U-box Gene Family AT5G65920 61.9 4.1e-145 511.5
Chy06g00167 CCT 1 874 U-box Gene Family AT2G45910 51.3 9.6e-228 786.9
Chy09g01031 . 25 808 U-box Gene Family AT4G25160 52.4 3.4e-225 778.5
Chy09g00312 . 39 554 U-box Gene Family AT5G40140 55.4 7.8e-93 338.2
Chy02g02552 . 27 537 U-box Gene Family AT5G40140 51.6 8.6e-68 255.0
Chy03g00609 . 4 815 U-box Gene Family AT1G76390 60.6 2.3e-266 915.2
Chy03g00609 . 13 815 U-box Gene Family AT1G20780 61.1 1.0e-274 943.0
Chy10g00794 . 25 775 U-box Gene Family AT1G27910 62.6 2.2e-255 878.6
Chy03g01664 . 1 803 U-box Gene Family AT1G27910 58.5 1.2e-253 872.8
Chy02g00840 . 1 593 U-box Gene Family AT5G67530 74.2 4.0e-260 894.0
Chy04g01907 . 12 162 U-box Gene Family AT5G67530 50.3 8.8e-42 168.7
Chy06g00229 . 688 819 U-box Gene Family AT5G67530 56.1 1.4e-39 161.4
Chy09g01031 . 26 808 U-box Gene Family AT5G61550 50.5 1.6e-222 769.6
Chy06g00436 . 50 592 U-box Gene Family AT1G04510 70.7 7.4e-218 753.4
Chy06g00436 . 50 561 U-box Gene Family AT2G33340 69.6 5.6e-204 707.2
Chy04g00818 . 10 278 U-box Gene Family AT3G07370 66.5 1.3e-101 366.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004594 2 4 1 2 2 1 2 1 1 1 1 1 2 0 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00210 Chy_Chr11 FPKM 24.425615 27.50548 21.408628 20.868471 24.888523 28.112392 24.520338 20.608356 22.964954 21.761467