Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g00229 | ATGTGGGATCTCAATGATTCTCCTGATCATGGCGGAACTGATGAATTTGAGGTTCTTTCATCGATTGATGGCGATGACGATAGAGGGAAATGGATAGGGTCCATTAATTCTAACTCGAGCTCTTCTGTGGTGGTTATGGAGGATGGATCCGACGCCGATGAGGCTAGCGTCGGCGAGGGAGAACCACTGCTTCGCCGTAATAACTTCTCCGTAACTCACCCACCGGCGACTCGGCAGTTCTTTCCCATGGAGGATTCTGACGTGGAGGCTTCATCGGCCGCCGTCGGTGGTTCAACTACGTTTCCTCCAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAGACAGAGCCTATCGCTGCTGTGAGACCAGTGGCGGTTCTGCAGCCAATAAAGAAAAGCCGCCGAGGGCCTAGGTCTCGGAGCTCTCAATATCGCGGCGTAACGTTCTACCGGCGCACCGGCCGATGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGTGGATTTGATACTGCCCATGCAGCTGCTCGAGCCTACGACAGAGCAGCTATAAAGTTTCGAGGAACAGAGGCAGACATAAATTTCAGCATTGAAGATTACGAGGATGATTTGCAGCAGATGGGAAATTTAACTAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGATATCCCAGAGGTAGCTCGAAATTTAGAGGTGTTACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGGCAGTTTTTAGGCAAAAAGTATGTTTATTTGGGGTTGTTCGATTCCGAGATCGAAGCTGCGAGAGCTTATGATAAAGCTGCAATAAAGTGTAATGGGAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAACCAAAGTCTTGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAAACACACCCTTTCATTTGGGAATCATTGCACAAATGTCACCCCAAATATTGATTTGCAAATTTCTAATGAATCTAACCCTCAGGAATCAAACATATTTGAGAATGATAATGTTATATGCCATACGCTCCTTCAGACGGAGAAAATGCAGTTTCGTAGCGAAATGATTGTTCGATCTCCACCCTCAGTCGAAACAACAAAACATGGGTGCTTGGAGACTCTTCACAATTACTCCCCACACATCAATCAATCGAACTCTCAAATTCATTTGTTGAGAAGCAGCAATGAAGAAGGGTTAGGAGGGAGTGATGAAGTTTCACTGAGTTTGAGTGAAAGCCATCAATGGCAGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAATTTTCAACGCCCAAAAATTGGCTGCAGAAGAATAATGGTTGCTTCTTCTTACAGAGACCCTCTTGA | 1452 | 45.87 | MWDLNDSPDHGGTDEFEVLSSIDGDDDRGKWIGSINSNSSSSVVVMEDGSDADEASVGEGEPLLRRNNFSVTHPPATRQFFPMEDSDVEASSAAVGGSTTFPPARWVGVKFCQTEPIAAVRPVAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGTEADINFSIEDYEDDLQQMGNLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSTKVLEQNLDLRLGNSSSKKHTLSFGNHCTNVTPNIDLQISNESNPQESNIFENDNVICHTLLQTEKMQFRSEMIVRSPPSVETTKHGCLETLHNYSPHINQSNSQIHLLRSSNEEGLGGSDEVSLSLSESHQWQQQSGGSQQFANAAASSGFPQLQFSTPKNWLQKNNGCFFLQRPS* | 484 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 2147611 | 2150752 | - | Chy11G188090.1 | Chy11g00229 | 235990 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g00229 | 483 | MobiDBLite | consensus disorder prediction | 42 | 69 | - | - | |
Chy11g00229 | 483 | PRINTS | Ethylene responsive element binding protein signature | 235 | 246 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00229 | 483 | PRINTS | Ethylene responsive element binding protein signature | 273 | 293 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00229 | 483 | MobiDBLite | consensus disorder prediction | 419 | 451 | - | - | |
Chy11g00229 | 483 | SMART | rav1_2 | 234 | 297 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00229 | 483 | SMART | rav1_2 | 142 | 204 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00229 | 483 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Chy11g00229 | 483 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 460 | - | - | |
Chy11g00229 | 483 | ProSiteProfiles | AP2/ERF domain profile. | 234 | 291 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00229 | 483 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 | 1 | 460 | - | - | |
Chy11g00229 | 483 | Pfam | AP2 domain | 233 | 282 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00229 | 483 | Pfam | AP2 domain | 142 | 190 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00229 | 483 | SUPERFAMILY | DNA-binding domain | 233 | 293 | IPR016177 | GO:0003677 | |
Chy11g00229 | 483 | ProSiteProfiles | AP2/ERF domain profile. | 142 | 198 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00229 | 483 | CDD | AP2 | 233 | 293 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00229 | 483 | Gene3D | AP2/ERF domain | 141 | 200 | IPR036955 | GO:0003700|GO:0006355 | |
Chy11g00229 | 483 | Gene3D | AP2/ERF domain | 233 | 292 | IPR036955 | GO:0003700|GO:0006355 | |
Chy11g00229 | 483 | CDD | AP2 | 142 | 197 | IPR001471 | GO:0003700|GO:0006355 | |
Chy11g00229 | 483 | SUPERFAMILY | DNA-binding domain | 141 | 199 | IPR016177 | GO:0003677 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Chy02g00901 | Chy11g00229 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy04g02096 | Chy-Chr4:26347995 | Chy11g00229 | Chy-Chr11:2147611 | 3.88E-89 | dispersed | |
Chy08g00813 | Chy-Chr8:15713566 | Chy11g00229 | Chy-Chr11:2147611 | 6.88E-88 | dispersed | |
Chy11g00229 | Chy-Chr11:2147611 | Chy11g01294 | Chy-Chr11:19151202 | 6.69E-104 | dispersed | |
Chy11g00229 | Chy-Chr11:2147611 | Chy02g00901 | Chy-Chr2:5833655 | 6.75E-131 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18671 | PF00847 | AP2 | 2.00E-09 | CL0081 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g00229 | K09284 | - | csv:101208665 | 910.983 |