Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00229 ATGTGGGATCTCAATGATTCTCCTGATCATGGCGGAACTGATGAATTTGAGGTTCTTTCATCGATTGATGGCGATGACGATAGAGGGAAATGGATAGGGTCCATTAATTCTAACTCGAGCTCTTCTGTGGTGGTTATGGAGGATGGATCCGACGCCGATGAGGCTAGCGTCGGCGAGGGAGAACCACTGCTTCGCCGTAATAACTTCTCCGTAACTCACCCACCGGCGACTCGGCAGTTCTTTCCCATGGAGGATTCTGACGTGGAGGCTTCATCGGCCGCCGTCGGTGGTTCAACTACGTTTCCTCCAGCTCGGTGGGTCGGCGTGAAGTTCTGCCAGACAGAGCCTATCGCTGCTGTGAGACCAGTGGCGGTTCTGCAGCCAATAAAGAAAAGCCGCCGAGGGCCTAGGTCTCGGAGCTCTCAATATCGCGGCGTAACGTTCTACCGGCGCACCGGCCGATGGGAATCTCACATATGGGACTGTGGCAAACAAGTTTATCTGGGTGGATTTGATACTGCCCATGCAGCTGCTCGAGCCTACGACAGAGCAGCTATAAAGTTTCGAGGAACAGAGGCAGACATAAATTTCAGCATTGAAGATTACGAGGATGATTTGCAGCAGATGGGAAATTTAACTAAGGAAGAATTTGTGCATGTTCTTCGTAGACAAAGCACGGGATATCCCAGAGGTAGCTCGAAATTTAGAGGTGTTACATTGCATAAATGTGGAAGATGGGAGGCTCGGATGGGGCAGTTTTTAGGCAAAAAGTATGTTTATTTGGGGTTGTTCGATTCCGAGATCGAAGCTGCGAGAGCTTATGATAAAGCTGCAATAAAGTGTAATGGGAAAGAAGCTGTTACAAACTTTGATCCCAGCATATATGAGGATGAGCTGAGTACAACTGAATCATCATCAACCAAAGTCTTGGAACAGAATCTTGATTTGAGGTTGGGCAATTCAAGCTCAAAAAAACACACCCTTTCATTTGGGAATCATTGCACAAATGTCACCCCAAATATTGATTTGCAAATTTCTAATGAATCTAACCCTCAGGAATCAAACATATTTGAGAATGATAATGTTATATGCCATACGCTCCTTCAGACGGAGAAAATGCAGTTTCGTAGCGAAATGATTGTTCGATCTCCACCCTCAGTCGAAACAACAAAACATGGGTGCTTGGAGACTCTTCACAATTACTCCCCACACATCAATCAATCGAACTCTCAAATTCATTTGTTGAGAAGCAGCAATGAAGAAGGGTTAGGAGGGAGTGATGAAGTTTCACTGAGTTTGAGTGAAAGCCATCAATGGCAGCAGCAATCTGGTGGCTCTCAACAATTTGCAAATGCTGCAGCATCATCAGGATTCCCACAACTTCAATTTTCAACGCCCAAAAATTGGCTGCAGAAGAATAATGGTTGCTTCTTCTTACAGAGACCCTCTTGA 1452 45.87 MWDLNDSPDHGGTDEFEVLSSIDGDDDRGKWIGSINSNSSSSVVVMEDGSDADEASVGEGEPLLRRNNFSVTHPPATRQFFPMEDSDVEASSAAVGGSTTFPPARWVGVKFCQTEPIAAVRPVAVLQPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGTEADINFSIEDYEDDLQQMGNLTKEEFVHVLRRQSTGYPRGSSKFRGVTLHKCGRWEARMGQFLGKKYVYLGLFDSEIEAARAYDKAAIKCNGKEAVTNFDPSIYEDELSTTESSSTKVLEQNLDLRLGNSSSKKHTLSFGNHCTNVTPNIDLQISNESNPQESNIFENDNVICHTLLQTEKMQFRSEMIVRSPPSVETTKHGCLETLHNYSPHINQSNSQIHLLRSSNEEGLGGSDEVSLSLSESHQWQQQSGGSQQFANAAASSGFPQLQFSTPKNWLQKNNGCFFLQRPS* 484
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2147611 2150752 - Chy11G188090.1 Chy11g00229 235990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00229 483 MobiDBLite consensus disorder prediction 42 69 - -
Chy11g00229 483 PRINTS Ethylene responsive element binding protein signature 235 246 IPR001471 GO:0003700|GO:0006355
Chy11g00229 483 PRINTS Ethylene responsive element binding protein signature 273 293 IPR001471 GO:0003700|GO:0006355
Chy11g00229 483 MobiDBLite consensus disorder prediction 419 451 - -
Chy11g00229 483 SMART rav1_2 234 297 IPR001471 GO:0003700|GO:0006355
Chy11g00229 483 SMART rav1_2 142 204 IPR001471 GO:0003700|GO:0006355
Chy11g00229 483 MobiDBLite consensus disorder prediction 1 23 - -
Chy11g00229 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 460 - -
Chy11g00229 483 ProSiteProfiles AP2/ERF domain profile. 234 291 IPR001471 GO:0003700|GO:0006355
Chy11g00229 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR TOE3 1 460 - -
Chy11g00229 483 Pfam AP2 domain 233 282 IPR001471 GO:0003700|GO:0006355
Chy11g00229 483 Pfam AP2 domain 142 190 IPR001471 GO:0003700|GO:0006355
Chy11g00229 483 SUPERFAMILY DNA-binding domain 233 293 IPR016177 GO:0003677
Chy11g00229 483 ProSiteProfiles AP2/ERF domain profile. 142 198 IPR001471 GO:0003700|GO:0006355
Chy11g00229 483 CDD AP2 233 293 IPR001471 GO:0003700|GO:0006355
Chy11g00229 483 Gene3D AP2/ERF domain 141 200 IPR036955 GO:0003700|GO:0006355
Chy11g00229 483 Gene3D AP2/ERF domain 233 292 IPR036955 GO:0003700|GO:0006355
Chy11g00229 483 CDD AP2 142 197 IPR001471 GO:0003700|GO:0006355
Chy11g00229 483 SUPERFAMILY DNA-binding domain 141 199 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy02g00901 Chy11g00229 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02096 Chy-Chr4:26347995 Chy11g00229 Chy-Chr11:2147611 3.88E-89 dispersed
Chy08g00813 Chy-Chr8:15713566 Chy11g00229 Chy-Chr11:2147611 6.88E-88 dispersed
Chy11g00229 Chy-Chr11:2147611 Chy11g01294 Chy-Chr11:19151202 6.69E-104 dispersed
Chy11g00229 Chy-Chr11:2147611 Chy02g00901 Chy-Chr2:5833655 6.75E-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18671 PF00847 AP2 2.00E-09 CL0081 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00229 K09284 - csv:101208665 910.983