Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00235 ATGAAATTAGCTCATCCTCTTTTGAGCTTCTTCTTCATTTCCTTTCTTCCTTTATTCTTTACATTCTTTACAGCCACAGCTTTAACGTTTGATTCCTACATTCCCAACCGGAGAATTCTGCATCAGCCGCTCTTTCCTATAGGCTCTGAGCCACCGCCGGAGATTGAATTCTCTCCACCTCCACCACCTCCGCCGGATTCTCCTGCCGATGATCAACCATTTTTCCATGAGCTACCGACGAGTCCAGATCAGAGTCAACCGCCTCCCTCCTCCAGTAATGGAACTATGCCTATCCCGGCTGCTACGGCGCAGCCGTCTAAGCCTACTAAGACTGTTGCGATTGCCATTTCGGTTGGGATTGTGACTTTGGGGATGCTTTCGGCTCTTGCCTTCTTTTTGTATCGTCATCGTGCGAAGCATCCCGGGGAGTCGCAGAAGCTTGTTGGAGGGAGTAATAATCCGGAGAGATTTGTGGAGGATTCGAGAGCGCCTCCTTCGAGTTTTTTTTATATTGGAACTGTTGAGCCGAGTCAGAGCTCTGTTGTGGAGCAGAATGGTGGTAATGGTGCTAATAGTTCGCCTTATCGGAAGCTGAATTCGATTAAGAGGTCGGATCGGTATCGTCCGAGTCCGGAGTTGCAGCCACTACCGCCTTTGCCTAAGCCGCCGGTGTCTATGTCGCCTCCGGCTTTGTCATCTTCTGATGAGGAAAGTCTGGATACGGCATTTCATACTCCGCAATGCTCGTCGATTGTTAGTCATGAGGATGGCTATTTTTCACCGGCTTCTCGCCGGAGTAATTCGGTTAAGAGCTTTTCAGCGGCGAGTTATAAGAATGACCATATGAATTCCAATCCTCCTCCTCCCATTCCGCATTCCAAAAGAACCTCTCCTAAATCGAGATTTTCGGTTTCTTCGACGAAGCGTAAATCGTCTCAGCCTCAGCCACCGCCACCGCCTCCTCCTCCACCGCGTCAGTTTGATGATTTTCGTGATACTCCGAATTCGAAAGAAACAATGCCTTTCTCTGCCACGAGACCTAGATTTTCGAAGCCTCCTCCCCCGCCGAATTTGGCGCTTCTTCAAACAATTAGCAATTCAGCTACATTTCCTCAAGTTCCGCAACCTGCTGGAGCTCCACCTCCTCCTCCGCCTCCGCCGCCTCCTCCCCCACCTCCACCTCCACGGCCGTCGGCGCGTCCGGCCTCTTATTCAACACCACAAAAACTAGGGTTGTCAGAAAACAGAATGTCGGCAGTCACTCCTCCAGACTCCTCTAAATCACAATCCTACTCAACAGCGAGATCAAACTCATCTCCGAAATCCACACCGAGTTCTACGGCAACAAATTCTGCTAAAGAAGACGCTGTCCTAAGCACTAATTCTATGGAGAGGCTGGAAGCAGAAGATGCAGATGGTGCAAAACCGAGATTGAAGCCCTTGCACTGGGACAAAGTACGAGCAACATCGGACCGAGCTACGGTCTGGGATCAACTTAAATCAAGCTCATTCCAATTAAACGAGGATATGATGGAGACACTTTTTGGCTTCAATTCTGCAAATTCTGTTCCCAAAGAAGCCACGAGAAAGTCTGTTCTTCCCCCCGTTGAGAAGGAAAACAGGGTATTAGACCCAAAAAAATCGCAGAACATAGCAATACTTCTAAGAGCACTTAATGTCACGCGTGATGAAGTGATCGAAGCTCTTCTAGATGGTAACCCAGAAGGCTTTGGTACTGAGCTCTTAGAAACTCTTGTAAAGATGGCTCCAACCAAAGAGGAAGAGATAAAACTTAGAGAGTACTGTGGTGATTCTTCAAAATTAGGGACTGCCGAAAGGTTTCTCAAGGCAGTGCTTGAAGTTCCATTTGCCTTTAGAAGAGTTGAGGCAATGCTGTACAGAGCCAATTTTGATTCAGAAGTAAAGTACCTGAGAAAATCTTTCCAAAGCCTTGAGGGTGCAAGTGAAGAATTAAAGAACAGTAGACTTTTTCTTAAACTCCTTGAAGCAGTTCTCAAGACAGGAAATAGGATGAATGTTGGTACGAATCGCGGTGATGCTAAAGCCTTTAAGCTTGAAACCCTCTTAAAATTAGTAGATATAAAGGGAACAGATGGAAAAACAACATTGCTTCATTTTGTTGTTCAAGAAATCATCAGATCAGAAGGTGGTGCTGATTCAACTAATGACAACCTTCAACCCCGTACGCAAGCTAAAATCGAGGATGAATTCAGAAAGCAGGGCTTGCAAGTTGTGGCTGGACTAAGCAGAGACCTCACCAATGTCAAGAAAGCAGCAGGGATGGACTCAGACGTCTTGAGCAGTTATGTCACAAAGCTCGAAATGGGGCTCGAAAAAGTAAGGTTGGTCTTACAATTCGAAAAGCCAGGAATGCAGGGAAAATTCTTTAACTCAATGAAAACATTCTTGAAAGAGGCAGAAGAGGAAATAGTCAGGATCAAGGCTGATGAAAAACAAGCTTTAACGCTCGTGAAAGCAGTGACGGAGTATTTCCATGGCGATGCAGCTAAGGAAGAAGCCCACCCCTTCCGAATCTTCATGATCGTTCGGGATTTTCTAACCATACTCGATCAAGTATGCAAAGAAGTCGGGAGAATGCAGGACGGAGTAATGGTGGGTGCTGCTAGATCCTTTCGAATATCCGCCACAGCCTCACTCCCAGTCCTCAGCAGGTATAATGTCAGACATGACCGAAGCTCCGACGAGGATAGCTCATCTCCATGA 2745 46.89 MKLAHPLLSFFFISFLPLFFTFFTATALTFDSYIPNRRILHQPLFPIGSEPPPEIEFSPPPPPPPDSPADDQPFFHELPTSPDQSQPPPSSSNGTMPIPAATAQPSKPTKTVAIAISVGIVTLGMLSALAFFLYRHRAKHPGESQKLVGGSNNPERFVEDSRAPPSSFFYIGTVEPSQSSVVEQNGGNGANSSPYRKLNSIKRSDRYRPSPELQPLPPLPKPPVSMSPPALSSSDEESLDTAFHTPQCSSIVSHEDGYFSPASRRSNSVKSFSAASYKNDHMNSNPPPPIPHSKRTSPKSRFSVSSTKRKSSQPQPPPPPPPPPRQFDDFRDTPNSKETMPFSATRPRFSKPPPPPNLALLQTISNSATFPQVPQPAGAPPPPPPPPPPPPPPPPRPSARPASYSTPQKLGLSENRMSAVTPPDSSKSQSYSTARSNSSPKSTPSSTATNSAKEDAVLSTNSMERLEAEDADGAKPRLKPLHWDKVRATSDRATVWDQLKSSSFQLNEDMMETLFGFNSANSVPKEATRKSVLPPVEKENRVLDPKKSQNIAILLRALNVTRDEVIEALLDGNPEGFGTELLETLVKMAPTKEEEIKLREYCGDSSKLGTAERFLKAVLEVPFAFRRVEAMLYRANFDSEVKYLRKSFQSLEGASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLETLLKLVDIKGTDGKTTLLHFVVQEIIRSEGGADSTNDNLQPRTQAKIEDEFRKQGLQVVAGLSRDLTNVKKAAGMDSDVLSSYVTKLEMGLEKVRLVLQFEKPGMQGKFFNSMKTFLKEAEEEIVRIKADEKQALTLVKAVTEYFHGDAAKEEAHPFRIFMIVRDFLTILDQVCKEVGRMQDGVMVGAARSFRISATASLPVLSRYNVRHDRSSDEDSSSP* 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2211403 2215404 - Chy11G188150.1 Chy11g00235 235996

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00235 914 SUPERFAMILY Formin homology 2 domain (FH2 domain) 384 874 - -
Chy11g00235 914 MobiDBLite consensus disorder prediction 228 283 - -
Chy11g00235 914 Gene3D Formin, FH2 domain 462 874 IPR042201 -
Chy11g00235 914 PANTHER FORMIN-LIKE PROTEIN 6 17 914 - -
Chy11g00235 914 MobiDBLite consensus disorder prediction 179 474 - -
Chy11g00235 914 MobiDBLite consensus disorder prediction 402 458 - -
Chy11g00235 914 PANTHER FORMIN-RELATED 17 914 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Chy11g00235 914 ProSiteProfiles Formin homology-2 (FH2) domain profile. 468 889 IPR015425 -
Chy11g00235 914 MobiDBLite consensus disorder prediction 296 311 - -
Chy11g00235 914 MobiDBLite consensus disorder prediction 50 70 - -
Chy11g00235 914 MobiDBLite consensus disorder prediction 211 227 - -
Chy11g00235 914 MobiDBLite consensus disorder prediction 179 198 - -
Chy11g00235 914 MobiDBLite consensus disorder prediction 374 401 - -
Chy11g00235 914 MobiDBLite consensus disorder prediction 87 106 - -
Chy11g00235 914 Coils Coil 810 830 - -
Chy11g00235 914 MobiDBLite consensus disorder prediction 50 106 - -
Chy11g00235 914 SMART it6_source 468 878 IPR015425 -
Chy11g00235 914 MobiDBLite consensus disorder prediction 142 161 - -
Chy11g00235 914 Pfam Formin Homology 2 Domain 472 863 IPR015425 -
Chy11g00235 914 MobiDBLite consensus disorder prediction 312 328 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00235 - - - csv:101208011 1527.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00845 Chy-Chr2:5378288 Chy11g00235 Chy-Chr11:2211403 6.92E-27 dispersed
Chy08g01021 Chy-Chr8:17390620 Chy11g00235 Chy-Chr11:2211403 1.73E-129 dispersed
Chy10g00056 Chy-Chr10:1398601 Chy11g00235 Chy-Chr11:2211403 4.96E-173 dispersed
Chy10g00942 Chy-Chr10:15003808 Chy11g00235 Chy-Chr11:2211403 4.66E-91 dispersed
Chy11g00235 Chy-Chr11:2211403 Chy11g00585 Chy-Chr11:6671338 4.49E-126 dispersed
Chy11g00235 Chy-Chr11:2211403 Chy02g02115 Chy-Chr2:25463736 2.79E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy04g00807 . 181 1055 FH2 protein (formin) Gene Family AT3G25500 50.7 2.7e-187 652.9
Chy10g00056 . 467 943 FH2 protein (formin) Gene Family AT3G25500 65.6 3.6e-163 572.8
Chy11g00235 . 475 894 FH2 protein (formin) Gene Family AT3G25500 63.5 1.0e-141 501.5
Chy08g01021 . 488 880 FH2 protein (formin) Gene Family AT3G25500 51.2 2.7e-102 370.5
Chy04g00807 . 623 1072 FH2 protein (formin) Gene Family AT2G43800 58.7 6.4e-137 485.3
Chy11g00235 . 475 910 FH2 protein (formin) Gene Family AT2G43800 55.0 1.5e-125 447.6
Chy11g00585 . 322 622 FH2 protein (formin) Gene Family AT4G15200 52.2 5.1e-53 205.7
Chy04g01020 . 440 586 FH2 protein (formin) Gene Family AT4G15200 65.5 1.1e-47 188.0
Chy04g01020 . 4 949 FH2 protein (formin) Gene Family AT5G54650 50.7 2.2e-177 619.8
Chy11g00585 . 476 939 FH2 protein (formin) Gene Family AT5G54650 63.3 2.9e-161 566.2
Chy04g00807 . 629 1030 FH2 protein (formin) Gene Family AT5G54650 50.4 2.3e-102 370.5
Chy11g00235 . 36 913 FH2 protein (formin) Gene Family AT5G67470 57.3 3.7e-233 805.1
Chy04g00807 . 610 1072 FH2 protein (formin) Gene Family AT5G67470 58.7 7.9e-135 478.4
Chy10g00056 . 505 925 FH2 protein (formin) Gene Family AT5G67470 63.0 1.9e-128 457.2
Chy08g01021 . 488 882 FH2 protein (formin) Gene Family AT5G67470 51.9 2.9e-105 380.2
Chy10g00942 . 328 815 FH2 protein (formin) Gene Family AT1G59910 52.5 3.3e-128 456.4
Chy04g00807 . 650 1031 FH2 protein (formin) Gene Family AT5G48360 52.1 4.2e-100 362.8
Chy11g00235 . 496 871 FH2 protein (formin) Gene Family AT5G48360 50.3 3.9e-90 329.7
Chy11g00235 . 472 870 FH2 protein (formin) Gene Family AT3G05470 52.2 2.6e-106 383.6
Chy04g01020 . 446 860 FH2 protein (formin) Gene Family AT3G05470 50.7 5.8e-106 382.5
Chy04g00803 . 932 1243 FH2 protein (formin) Gene Family AT1G42980 50.2 6.1e-68 254.6
Chy04g00803 . 1 1250 FH2 protein (formin) Gene Family AT1G31810 69.2 0.0e+00 1230.7
Chy02g02475 CCT 1 376 FH2 protein (formin) Gene Family AT1G31810 54.5 1.7e-127 454.5
Chy07g00331 . 1075 1397 FH2 protein (formin) Gene Family AT5G07650 63.8 7.7e-110 395.2
Chy12g01523 CCT 1678 1959 FH2 protein (formin) Gene Family AT5G07650 70.9 1.7e-109 394.0
Chy02g02115 . 986 1305 FH2 protein (formin) Gene Family AT5G07650 62.0 1.5e-108 391.0
Chy04g00803 . 916 1247 FH2 protein (formin) Gene Family AT5G07650 59.0 1.8e-106 384.0
Chy12g01523 CCT 1601 1959 FH2 protein (formin) Gene Family AT5G07770 63.9 6.7e-119 424.9
Chy07g00331 . 1000 1389 FH2 protein (formin) Gene Family AT5G07770 58.6 1.5e-118 423.7
Chy02g02115 . 909 1297 FH2 protein (formin) Gene Family AT5G07770 56.7 2.0e-115 413.3
Chy04g00803 . 852 1241 FH2 protein (formin) Gene Family AT5G07770 55.2 2.2e-114 409.8
Chy07g00331 . 992 1400 FH2 protein (formin) Gene Family AT3G32400 74.8 3.0e-168 588.6
Chy02g02115 . 893 1306 FH2 protein (formin) Gene Family AT3G32400 66.1 7.6e-148 520.8
Chy04g00803 . 852 1246 FH2 protein (formin) Gene Family AT3G32400 66.2 2.4e-141 499.2
Chy12g01523 CCT 1571 1962 FH2 protein (formin) Gene Family AT3G32400 57.8 6.1e-121 431.4
Chy07g00331 . 1 1400 FH2 protein (formin) Gene Family AT2G25050 52.9 0.0e+00 1152.9
Chy02g02115 . 47 1306 FH2 protein (formin) Gene Family AT2G25050 50.7 4.5e-284 974.5
Chy02g02475 CCT 1 374 FH2 protein (formin) Gene Family AT2G25050 63.6 9.5e-141 498.4
Chy07g00331 . 1001 1390 FH2 protein (formin) Gene Family AT5G07780 54.4 3.3e-105 379.0
Chy12g01523 CCT 1602 1959 FH2 protein (formin) Gene Family AT5G07780 56.7 2.7e-102 369.4
Chy04g00803 . 853 1242 FH2 protein (formin) Gene Family AT5G07780 52.5 1.3e-101 367.1
Chy02g02115 . 916 1297 FH2 protein (formin) Gene Family AT5G07780 53.3 4.2e-100 362.1
Chy02g02475 CCT 1 662 FH2 protein (formin) Gene Family AT5G07740 59.3 7.6e-197 685.3
Chy07g00331 . 1074 1397 FH2 protein (formin) Gene Family AT5G07760 65.5 4.9e-110 396.0
Chy02g02115 . 985 1305 FH2 protein (formin) Gene Family AT5G07760 64.4 8.4e-110 395.2
Chy12g01523 CCT 1677 1959 FH2 protein (formin) Gene Family AT5G07760 71.4 7.1e-109 392.1
Chy04g00803 . 926 1247 FH2 protein (formin) Gene Family AT5G07760 60.4 1.1e-104 378.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007546 2 1 2 3 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00235 Chy_Chr11 FPKM 6.346295 6.097207 14.340516 14.101413 44.750935 39.823078 47.243641 10.050267 9.700874 10.987524