Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00241 ATGATTCTGATTGGGTCTACTTTGGGAATTGGAAGTTCCATCTCCTACAAACCTCACTTCTCGAACAGTTTGCGAACTGGGTTTTACATTAAAGCTTATTCTAAACACCTATGTTTTAATGGAGGAGAGGATGGAAAGAAGAAAAGGGTCGTCGTCGTCGGCTCCGGTTGGGCTGGCCTTGCCGCTGCTAATCACCTCTGCAATCAGGGATTTGATACCACTGTTCTTGAACCAAGCAATAATTTTGGTGGTGCTGATATTCATGGAATTCGTGGTTACTGGCGTCCCTATAAGAATATATTTGGCCTCGTTGATGAGCTTGGTATCGCTCCTTTCACAAACTGGACAGCACCTGCTCATTATTCAGTTGACGGGTTGGAGGTAAAATTTCCACTATTCCAAGATCTGCCTCAACTGCCAACTCCTCTCGGAACCTTAATTTATCCAGAATTCCCCCAGCTCCCGTTGTTGGATAGGTTAACATCACTTCCTTTGATGGCTGCAGTTATTGACTTCGACAATACGGATACAGCATGGAGAAAATATGACTCAATTACCGCCCGGGAGCTATTCAGGCAGTTTGGCTGTTCAGAAAAGCTCTATAGTAGCATACTCAATCCATTGCTTCAAGTAGGATTATATGCTCCAGCCGAGCAGTGCAGTGCTGCAGCAACCTTGGGAATTTTATACTACACTATCCTTGCTCACCAGAATGATTTCAATCTAGTTTGGTGCCGTGGAACTGTTAAAGAAATGATTTTCCAGCCATGGATAGACTTGCTGGAGAGCAAGGGATGTAGATTTGTTGGAAGTAGAAAAATAACAGATGTAATTGTAGATGATGATACAAACTGTCTATCGGACATTCGTTGTGGCAGAGAAAGATATGAGGCCGATGCAATTGTATTTGCTGTTGAAATTTCTGTACTCCAAGAACTCATTCGTGATTCTGCAGCCTTATACACAAAAGAGGAGTTCGTCAAGGTTTTAAACTTGAGAAGTGTTGATTTGCTCACTGTTAAGCTTTGGTTTGATAGAAAAGTAAATATTCCAACTGTAAGCAATTCTTGCTCGGCCTTGGATAATTCATTTGGGTGGAGTTTCTTCAACTTAAATGCCATTCAAGACGAATACAAAGACGAATCAGTTACAGTGTTGCAAGCTGACTTTTATCACGCCAACGAGCTGTTGCCACTAAATGATGAAGCTATCATTGAAAAGGTCAAATCCTACCTCTCAACATGCATTAAAGACTTTGAGAATGCCATCGTGGTGAAGAAGGAAATCGGAAAGTTTCCAGAATCATCAACTCACTTCTTTCCTGGTTCATACAAATACATGATGCGCGGCTTTACGTCGTTCCCAAACGTGTTCATGGCTGGAGATTGGATCATAAACCGTCACGGATCGTGGTCACAGGAGAAATCATATGTGACTGGCCTTGAAGCTGCAAATAGAGTGGTGGATTTTCTTGAAGAAGGAAGTTTTGCTAAAATTGTGCCAGTAGAGAAAGATGAGCCTCATGTGGAGGCTCTTCGTGGTCTCAATAGAAGGATTGATGAGATTAGATCCCAACTCCCATTCAACGGGTTCTTCCTCTAA 1602 42.32 MILIGSTLGIGSSISYKPHFSNSLRTGFYIKAYSKHLCFNGGEDGKKKRVVVVGSGWAGLAAANHLCNQGFDTTVLEPSNNFGGADIHGIRGYWRPYKNIFGLVDELGIAPFTNWTAPAHYSVDGLEVKFPLFQDLPQLPTPLGTLIYPEFPQLPLLDRLTSLPLMAAVIDFDNTDTAWRKYDSITARELFRQFGCSEKLYSSILNPLLQVGLYAPAEQCSAAATLGILYYTILAHQNDFNLVWCRGTVKEMIFQPWIDLLESKGCRFVGSRKITDVIVDDDTNCLSDIRCGRERYEADAIVFAVEISVLQELIRDSAALYTKEEFVKVLNLRSVDLLTVKLWFDRKVNIPTVSNSCSALDNSFGWSFFNLNAIQDEYKDESVTVLQADFYHANELLPLNDEAIIEKVKSYLSTCIKDFENAIVVKKEIGKFPESSTHFFPGSYKYMMRGFTSFPNVFMAGDWIINRHGSWSQEKSYVTGLEAANRVVDFLEEGSFAKIVPVEKDEPHVEALRGLNRRIDEIRSQLPFNGFFL* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2273285 2277040 - Chy11G188210.1 Chy11g00241 236002

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00241 533 PANTHER PROTOPORPHYRINOGEN OXIDASE 31 509 - -
Chy11g00241 533 Gene3D - 44 488 IPR036188 -
Chy11g00241 533 PANTHER OS04G0560500 PROTEIN 31 509 - -
Chy11g00241 533 SUPERFAMILY FAD/NAD(P)-binding domain 46 491 IPR036188 -
Chy11g00241 533 Pfam Flavin containing amine oxidoreductase 58 487 IPR002937 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00241 - - - csv:101207523 1032.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g01508 Chy-Chr7:19355491 Chy11g00241 Chy-Chr11:2273285 2.28E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g190 . . . Bda08g00982 . . . . . . . Cma20g00737 . Car20g00639 . . . . . . . . . . . . . . . . . . . . . Lsi10g00509 . Chy11g00241 . . . . . . Bpe05g00298 . . . . Cmo20g00734 . . . . Cpe16g00329 . . . . . . . . Cla02g01184 Cam02g1261 Cec02g1272 Cco02g1310 Clacu02g1243 Cmu02g1210 Cre02g1525 . Csa02g01408 . Cme11g00364
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011350 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 0 1 1 1 1 1 4 2 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00241 Chy_Chr11 FPKM 45.344826 47.216923 16.607967 15.626086 11.668032 11.923096 10.94996 31.797888 31.961971 33.132893