Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00244 ATGTTCTCAGAGTTGATGAACTTTCTGAGAGCTTGTTTTCGACCGAGGTCGGATCAACATGTACACAAAGGTTCCGATGCTGGTGGTCGACAGGATGGTCTCCTATGGTACAAAGATAGTGGGCAGCATGCCAATGGTGAGTTTTCAATGGCTGTAGTTCAGGCTAACAATTTACTTGAGGATCAAAGCCAGATGGAGTCAGGCAATTTGAGCTTGCACGAGGCCGGGCCATATGGTACTTTTGTTGGTGTGTATGATGGGCATGGAGGGCCCGAGACATCTCGTTATGTAAATGATCACCTTTTCCAGCATCTTAAAAGGTTGACTTCAGAGCAACAATCCATGTCAGTGGATGTCATACGGAAGGCATTTCAAGCTACTGAAGAGGGGGTCATTGCTCAAGTTTCAAAACAATGGTCAATAAGGCCACAAATTGCAGCTGTTGGATCTTGCTGCCTTGTTGGCGTAATTTGTGGTGGAACCCTTTACATTGCCAACCTTGGCGATTCACGAGCTGTTTTAGGGAGAGTTGTAAAGGCGACAGGGGAAGTTTTGTCCGTTCAGTTGTCAGCTGAGCATAATGCTTCTATAGAGTCTGTGAGGCAGGAGCTCCGTGCCCTGCATCCTGATGATCCACAGATTGTAGTCTTGAAGCATAATGTATGGCGCGTTAAGGGCCTTATACAGGTTTCTCGATCTATTGGCGATGTCTATTTAAAGAGAGCTGAGTTTAACCGAGAGCCTCTTTATGCTAAGTTTCGCCTTCGTGAACCTATCAAAAAGCCCATACTGAGCGCCGAACCATCTATTTCAGTGCTCCAATTGCAGCCACAGGATCAATTTATTATATTTGCTTCAGATGGGCTCTGGGAACACCTTAGCAATCAGGAAGCTGTTGATATTGTCCAAAACCATCCACGTAATGGAAGTGCAAGGAGGCTGGTGAAAGCAGCACTACAAGAGGCAGCAAAGAAGAGAGAAATGAGATACTCAGATTTGAAGAAGATTGACCGGGGGGTACGGCGACATTTCCACGATGACATCACAGTGATTGTTGTTTTTCTTGACTCAAACCTTGTGAGCCGAGCTAGCTCTACAAAATGTGCAAGCCTATCAGTGCGAGGGGGTGGAGTTAACTTACGTCCAAACTCATTGGCCCCCTGCACCACACCATCAGACACTGGCATGGCCTGA 1194 46.57 MFSELMNFLRACFRPRSDQHVHKGSDAGGRQDGLLWYKDSGQHANGEFSMAVVQANNLLEDQSQMESGNLSLHEAGPYGTFVGVYDGHGGPETSRYVNDHLFQHLKRLTSEQQSMSVDVIRKAFQATEEGVIAQVSKQWSIRPQIAAVGSCCLVGVICGGTLYIANLGDSRAVLGRVVKATGEVLSVQLSAEHNASIESVRQELRALHPDDPQIVVLKHNVWRVKGLIQVSRSIGDVYLKRAEFNREPLYAKFRLREPIKKPILSAEPSISVLQLQPQDQFIIFASDGLWEHLSNQEAVDIVQNHPRNGSARRLVKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSNLVSRASSTKCASLSVRGGGVNLRPNSLAPCTTPSDTGMA* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2291313 2293789 - Chy11G188240.1 Chy11g00244 236005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00244 397 SMART PP2C_4 39 353 IPR001932 -
Chy11g00244 397 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Chy11g00244 397 SUPERFAMILY PP2C-like 59 356 IPR036457 -
Chy11g00244 397 PANTHER ALPHABET, ISOFORM E-RELATED 5 387 - -
Chy11g00244 397 Pfam Protein phosphatase 2C 79 324 IPR001932 -
Chy11g00244 397 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 5 387 - -
Chy11g00244 397 Gene3D - 35 367 IPR036457 -
Chy11g00244 397 ProSiteProfiles PPM-type phosphatase domain profile. 47 355 IPR001932 -
Chy11g00244 397 CDD PP2Cc 48 355 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy01g00665 Chy11g00244 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02107 Chy-Chr4:26420099 Chy11g00244 Chy-Chr11:2291313 0 dispersed
Chy06g02254 Chy-Chr6:26572802 Chy11g00244 Chy-Chr11:2291313 0 dispersed
Chy10g00608 Chy-Chr10:12662172 Chy11g00244 Chy-Chr11:2291313 0 dispersed
Chy01g00118 Chy-Chr1:763429 Chy11g00244 Chy-Chr11:2291313 4.00E-144 transposed
Chy04g01778 Chy-Chr4:24116138 Chy11g00244 Chy-Chr11:2291313 1.39E-142 transposed
Chy11g01577 Chy-Chr11:22324863 Chy11g00244 Chy-Chr11:2291313 6.01E-157 transposed
Chy01g00665 Chy-Chr1:4773126 Chy11g00244 Chy-Chr11:2291313 0 wgd
Chy11g00244 Chy-Chr11:2291313 Chy02g00538 Chy-Chr2:3239014 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00244 - - csv:101221640 782.326