Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00245 ATGGCATTCTTCTGTAGAATAAGCCAATCCAAGCTGAAGTCCTTTTTGGATCAATTCAAGAGACATTACTTTCAAATCTCTCACTCTGCCGCGCTCGATTCTCGTCGTACCACGCATCATGTTTATGGGTATGTAGAGCGGATTCCCCGTAGACCAGCTGATTTTGCCGATAAATTTAGGTTTTATGCTGCCCCGGTTCAGTTTCAAGGTAATGCGAAGAAGGAAGAGAAGGACAAGAGTGGGCCGCGACTTAATGATAAAATTAAGGCTGACTTTGTGAGGCTTGTATCTGATGATGGACATACAATTCTTTCGCTACGTGATGCTCTTAAACGTGCTCGTGAGCTCAAGCTTGATTTGGTTGAGGTCCAACAAAAAGCTAATCCACCCGTGTGTAAACTCATGGACTTCCACAGAGAGAAGTACAAAAAGCAAATAAGGGAAAAAGATCGTGTGAAAAGCAAGGTTGAAATGGTTATGAAAAAAGCTGGACACAAAGAAGTTCGCTTCACGGGGAAAACTGAGGAGAAGGACCTAAGGATGAAAGCTGATATGGTAAAGCGATTGATGGAACGTGGTTACCGCGTGAAGTGTACTGCCAGGGGTGGTGAGAATCAGGACTTAGGCGCCTTGTTATCTCGTCTCACTGCTTTGATAGAGGATGTGGCATTGGTGGAAAATGGACCGAGTGTGGAAAAAGGGCAGGCATTTATTATAGTCAGGCATGTTAAATTTGGCCCCTCGAAGAAAGGGGGCGGCAGTAAAGCATCGAAAGTTGTTGCAAATGCGGAACAGAAGGTTCAAAATGGCTCCACCCCTCTGGTTTCAGCAGTGGATCCTGAAGATGGTTTTGAGAGTTCTGAAGAAACTACCTGGACAGTTGATGGTACTAGTGATTCTGACGAAGCGTTTGACTTGAAAGATGATAGAAATGTGATTACCTCAACAACCGTTACTAAGAAAATGAATGTTGTTTCAGACAGGGATGTTCCTGATTCTGGTAGAACCAGCTCAGTTCCACTCTTTCAACAAGATTCTTCCATCAAAACCGATAATAGACCCAAAAAGATCGAACCTATGAACCATTTCCAACCACCAAATATAACAGACCACTACAGCCAACGTGCTAGAGATTCACTCCGATCAGGACCCCAGATTCGCGAACCTATGAACCGTTTCCAACCACCAAATGTAGCAGACTGCTACAGCCAAGGTGCTAGAGATTCACTCCGTTCAGAACCCCAGACTCGCGAACCTATGAACCGTTTCCAACCACCAAATGTAACTGACCGCTACAGCCGAGGTGCTAGAGATTCACTCCGATCAGAACCCCAAATTCGTGATCAGAGGTGGCACCCTCCTCCAAATACAAACTTCTCTCCCACGATGAGAGAAACCAGACAATATGATAACAATACTTCTGTATCAAGAAACATCAACCATTCTTCAAATTCGACATCCACACCTGGTCCATCACATCATACCGATTCAAGTCCATCCAAAACAAGCTTTGGGATCTTCAGTTCTTCAAACTCCAATGCTCCAGGGAAGCAAGATCCACCAGCCACAGGTTATCAAGGGAATCGAGGGCCTCCATACACACCTTCGACTAATCCTAATGCACCTGGAGATGCAGAAAATACAAAGTTTCCAATAACGAACTCGGAAGGCAATTTGAACAAGGGACAGAAAAGTTGGGGAATTTTCAGCAATCTTTTGGAGATGTTTGGCAGCTTACTTGTTCAGATATTATCCCTTGTGATGGAGCAACAGGATTCTGTGGACAAGGAGTCTCTTATTGGTACTTGCAACAACAGAGATGGTGTTTCTTCAAGTGATATCCAGATTACAACTATAAATAATGATGAAGGTAGAAGAAAAAATGAGAATACAAGCGATAAACCTAATATTCCGCATATATACAGGCAAGATATTGTAAAAAGCAAAGGTAGTGGTATGATAGGGATTGTGACTGAAGTTGCTGGTGATGCTGATTCAGATAGTGACATTACTGATGATGAAGATGAAGATGATGACGGTGAAGATGGTGGGAATGACGATGAGTGTGATGATAATGATGGTGATGGAGAGAAAGAAGGTCAGAACAAGGAAAATTGTGGTGATGACAGTAATGGCAGACATTCCAACGGAGATAATTATAAGAGCCAACCTCTTCCTGATAATGAAGTTCGTGTCCTTTGGATGGATGAAAGTGAGACAACTCAGCATGTCAATGATTTAACAGTCATTGATAGGGGGTTTGTACATGGTGATTTTGTTGCTGCTGTTTCTGATCCAACAGGGCAAGCAGGTGTTGTGGTAGATGTTAATATCTCTGTTGATTTGTTAGTTCCTGATGGATCAATCATGAAAGATATATCATCTAAAGACTTAAAACGTGTGAGAGATTTCACAGTGGGAGATTATGTGGTCCTTGGCCCATGGTTGGGTAGAGTTGATGATGTATTGGATAATGTGACTGTGATGTTTGATGATGGCTCTAAGTGTAAGGTCACAAAGGCAGAGCCATTGCGGCTCAAACCAGTTTCTAAAAATACCCTTGAAGATGCAAACTTTCCCTACTATCCTGGTCAGCGTGTAAGGGCGACTTCAACAGTTTTTAAGAATTCTAAATGGCTTTCTGGTTTATGGAAACCTAATCGCTTGGAAGGCACTGTCACGAAAGTTACAGTTGGTTCAGTGTTCATTTATTGGATAGCGTCTGCTGGATATGGACCAGATTCTTCTACTGCCCCAGCCGAAGAACAAACCCCAAAGAACTTGAGGTTATTAACTTGTTTCTCACATGCTAATTGGCAGTTGGGTGACTGGTGTCTTCTTCCTCCATCATTCTCTGCTGGCCTGACTAAGGACCCATCACAAACAGAACTTTCAGTGACCAACACATTAGATTGTGCACAATCGGTGGGTGCTTGTGATTCGGAGGATACTGTGCTAGATGAATTAAGTGGGACAACTGAATCCACTGATCTTGATTCCATTAGTGCATGCGATGGAAATTATAGGAATCCTGTGGATAATAGTTTACCCGAATCTAGTAGTTCTAGAGCTCTCAAGGAGACTGCCCATGAGACTTGGCCTCTACATCGCAAAAAAATTCGCAAAGTTGTTGTCAGGAGAGATAAGAAGGCTAGAAAGAAAGAGGAAAACTTTGAGAGGGCCCTTCTAATTATCAATACTAAGACAAGAGTTGATGTTGCATGGCAGGATGGTCAAACAGAACTTGGACTGGATTCAACAAGCTTGATTCCAATTGATAATCCAGGTGATCATGAATTTGTTCCAGAACAGTATGTGGTTGAGAAGGCCTCCGATAATGATGATGATGTTAGCGAAAGCAGGCGAGTTGGAGTTGTGAAAAGTGTACATGCAAAGGAGCGAACAGCCTGTGTGAGGTGGTTAAAACCAGTCTCCAGGGCAGAGGATCCTCGAGAATTTGACAAAGAAGAAATTGTTAGTGTATATGAGCTAGAGGGGCATCCAGATTATGACTACTGTTATGGTGATGTGGTTGTTCGATTGTCCCCTGTTTCTGATTCTGCAGAGGCAATGTCTTTGGGAATCAATACAGAGGAATTAAAGCAGCAGAGTTCAACGAATGAGATGATGAGTTGTACAGAGTTCAACAATGCTTCAGGAAGCCAGAAAATAGAAGATACAACATGTAGTGATGATTGCATCGACTTCTCAGATCTCTCTTGGGTTGGAAATATAACTGGTCTTAAGAATGGTGATATTGAAGTTACTTGGGCTAATGGCATGGTTTCAACGGTTGGCCCTCAAGCAATTTATGTTGTTGGTCGAGATGATGATGATGAATCAATTGCTGCTGGTAGTGAAGTAAGTAATGGTGCTGCAAGTTGGGAAACAGTTGACAATGATGAAATGGATTCTGTTGAGAATGCTGCGGAGGATATTGAACTGCAGGATACTGGTGCAAATTCTGAAGAGGAAGAAAGTGAACAGAGTAATTCAGGAAGAAATCTAGCTCTATCTGTTCCACTTGCTGCACTTCGATTTGTTACTAGATTGGCTGCTGGAATATTCTCACGAGGACCAAGAAATCCAGATTCAATGGATTTGGATTCCCACAGTGAAAGTGAGACTCAATCCTTGGATATTCAAGCTTCAGAGGAAAAAGATTCTGGGCTTCAGTCTACCTCTCTTAAATCCAATTCTTTTGATGCTTCTGATATGAACTCTGATTGTGGAAGAGGAGAGGATAGTGTTGCTTCAGAGCCATCAGAAGTGTTAGAATCGGCAAAAACTTCAAGCAATCTGAGGACTGTAGAATTAGATACTTCAGCATGCCATGAGGATGGCACCTGCAGCTTCAAGGGCTTTGATATAGCTAAAGATCCTTTAGACCATTATTTTCTTGGTACAAATGGACAAACTAACAATGGAAGGAAATGGCTCAAGAAAATCCAGCAAGATTGGAGTATCCTCCAGAATAATTTACCAGATGGAATATATGTTCGAGTCTACGAAGATCGTATGGACCTTTTAAGAGCAGTCATTGTTGGGGCTTATGGGACCCCTTACCAAGATGGTCTCTTCTTCTTCGATTTTCACCTCCCACCAGAGTACCCTGATGTTCCTCCATCAGCGTATTATCATTCAGGTGGGTGGCGGATAAATCCCAATCTTTATGAGGAAGGGAAAGTCTGCCTTAGCCTTTTAAATACTTGGACTGGCAGAGGAAATGAAGTGTGGGATCCAAAGTCATCTAGCATCCTTCAAGTGTTGGTCTCGCTTCAGGGATTGGTGTTAAATTCTAAACCATATTTTAATGAAGCTGGATATGACAAGCAAGTTGGAACAGCAGAAGGAGAGAAAAATTCATTGTCGTACAACGAAAACACTTTCTTATTAAACTGCAAGACAATCATGTATCTTATGAGGAAGCCTCCCAAGGACTTTGAAGAACTCATCAAGGAACATTTTAGGAGGCGTGGATATTTCATCCTGAAAGCCTGTGATGCATACATGAAAGGTCACTTAATTGGCTCTCTCACAGAAGATGCTTCTATAAGAGAAGAAAGTGATCCCAACTCGACATCTGTTGGATTTAAGCTTATGCTCGCTAAGATTGTTCCAAAGCTCTTCTCGTCATTGAACGAAGTTGGAGCTGATTGTCAAGATTTTAAGCATTTTCAACAGTTGTAG 5190 42.27 MAFFCRISQSKLKSFLDQFKRHYFQISHSAALDSRRTTHHVYGYVERIPRRPADFADKFRFYAAPVQFQGNAKKEEKDKSGPRLNDKIKADFVRLVSDDGHTILSLRDALKRARELKLDLVEVQQKANPPVCKLMDFHREKYKKQIREKDRVKSKVEMVMKKAGHKEVRFTGKTEEKDLRMKADMVKRLMERGYRVKCTARGGENQDLGALLSRLTALIEDVALVENGPSVEKGQAFIIVRHVKFGPSKKGGGSKASKVVANAEQKVQNGSTPLVSAVDPEDGFESSEETTWTVDGTSDSDEAFDLKDDRNVITSTTVTKKMNVVSDRDVPDSGRTSSVPLFQQDSSIKTDNRPKKIEPMNHFQPPNITDHYSQRARDSLRSGPQIREPMNRFQPPNVADCYSQGARDSLRSEPQTREPMNRFQPPNVTDRYSRGARDSLRSEPQIRDQRWHPPPNTNFSPTMRETRQYDNNTSVSRNINHSSNSTSTPGPSHHTDSSPSKTSFGIFSSSNSNAPGKQDPPATGYQGNRGPPYTPSTNPNAPGDAENTKFPITNSEGNLNKGQKSWGIFSNLLEMFGSLLVQILSLVMEQQDSVDKESLIGTCNNRDGVSSSDIQITTINNDEGRRKNENTSDKPNIPHIYRQDIVKSKGSGMIGIVTEVAGDADSDSDITDDEDEDDDGEDGGNDDECDDNDGDGEKEGQNKENCGDDSNGRHSNGDNYKSQPLPDNEVRVLWMDESETTQHVNDLTVIDRGFVHGDFVAAVSDPTGQAGVVVDVNISVDLLVPDGSIMKDISSKDLKRVRDFTVGDYVVLGPWLGRVDDVLDNVTVMFDDGSKCKVTKAEPLRLKPVSKNTLEDANFPYYPGQRVRATSTVFKNSKWLSGLWKPNRLEGTVTKVTVGSVFIYWIASAGYGPDSSTAPAEEQTPKNLRLLTCFSHANWQLGDWCLLPPSFSAGLTKDPSQTELSVTNTLDCAQSVGACDSEDTVLDELSGTTESTDLDSISACDGNYRNPVDNSLPESSSSRALKETAHETWPLHRKKIRKVVVRRDKKARKKEENFERALLIINTKTRVDVAWQDGQTELGLDSTSLIPIDNPGDHEFVPEQYVVEKASDNDDDVSESRRVGVVKSVHAKERTACVRWLKPVSRAEDPREFDKEEIVSVYELEGHPDYDYCYGDVVVRLSPVSDSAEAMSLGINTEELKQQSSTNEMMSCTEFNNASGSQKIEDTTCSDDCIDFSDLSWVGNITGLKNGDIEVTWANGMVSTVGPQAIYVVGRDDDDESIAAGSEVSNGAASWETVDNDEMDSVENAAEDIELQDTGANSEEEESEQSNSGRNLALSVPLAALRFVTRLAAGIFSRGPRNPDSMDLDSHSESETQSLDIQASEEKDSGLQSTSLKSNSFDASDMNSDCGRGEDSVASEPSEVLESAKTSSNLRTVELDTSACHEDGTCSFKGFDIAKDPLDHYFLGTNGQTNNGRKWLKKIQQDWSILQNNLPDGIYVRVYEDRMDLLRAVIVGAYGTPYQDGLFFFDFHLPPEYPDVPPSAYYHSGGWRINPNLYEEGKVCLSLLNTWTGRGNEVWDPKSSSILQVLVSLQGLVLNSKPYFNEAGYDKQVGTAEGEKNSLSYNENTFLLNCKTIMYLMRKPPKDFEELIKEHFRRRGYFILKACDAYMKGHLIGSLTEDASIREESDPNSTSVGFKLMLAKIVPKLFSSLNEVGADCQDFKHFQQL* 1730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2316394 2332099 + Chy11G188250.1 Chy11g00245 236006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00245 1729 CDD UBCc 1481 1631 IPR000608 -
Chy11g00245 1729 MobiDBLite consensus disorder prediction 529 559 - -
Chy11g00245 1729 MobiDBLite consensus disorder prediction 1375 1406 - -
Chy11g00245 1729 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 628 1728 - -
Chy11g00245 1729 Coils Coil 106 126 - -
Chy11g00245 1729 MobiDBLite consensus disorder prediction 273 303 - -
Chy11g00245 1729 Gene3D - 75 150 IPR036787 GO:0003743|GO:0006413
Chy11g00245 1729 MobiDBLite consensus disorder prediction 1009 1027 - -
Chy11g00245 1729 MobiDBLite consensus disorder prediction 434 448 - -
Chy11g00245 1729 MobiDBLite consensus disorder prediction 1356 1431 - -
Chy11g00245 1729 TIGRFAM infC: translation initiation factor IF-3 84 239 IPR001288 GO:0003743|GO:0006413
Chy11g00245 1729 SUPERFAMILY Translation initiation factor IF3, C-terminal domain 165 244 IPR036788 GO:0006413
Chy11g00245 1729 SUPERFAMILY Translation initiation factor IF3, N-terminal domain 81 151 IPR036787 GO:0003743|GO:0006413
Chy11g00245 1729 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 23-RELATED 628 1728 - -
Chy11g00245 1729 MobiDBLite consensus disorder prediction 1009 1028 - -
Chy11g00245 1729 Pfam Translation initiation factor IF-3, N-terminal domain 84 150 IPR019814 GO:0003743|GO:0006413
Chy11g00245 1729 Pfam Ubiquitin-conjugating enzyme 1483 1627 IPR000608 -
Chy11g00245 1729 MobiDBLite consensus disorder prediction 696 715 - -
Chy11g00245 1729 MobiDBLite consensus disorder prediction 451 519 - -
Chy11g00245 1729 Gene3D - 158 246 IPR036788 GO:0006413
Chy11g00245 1729 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1478 1638 IPR000608 -
Chy11g00245 1729 SUPERFAMILY UBC-like 1462 1645 IPR016135 -
Chy11g00245 1729 Gene3D Ubiquitin Conjugating Enzyme 1443 1712 IPR016135 -
Chy11g00245 1729 SMART ubc_7 1481 1638 - -
Chy11g00245 1729 MobiDBLite consensus disorder prediction 325 559 - -
Chy11g00245 1729 MobiDBLite consensus disorder prediction 330 348 - -
Chy11g00245 1729 MobiDBLite consensus disorder prediction 618 637 - -
Chy11g00245 1729 MobiDBLite consensus disorder prediction 665 695 - -
Chy11g00245 1729 MobiDBLite consensus disorder prediction 659 725 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00245 K10581 UBE2O; ubiquitin-conjugating enzyme E2 O [EC:2.3.2.24] - csv:101220698 2186.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00983 Chy-Chr5:14529639 Chy11g00245 Chy-Chr11:2316394 1.04E-06 dispersed
Chy07g00079 Chy-Chr7:730455 Chy11g00245 Chy-Chr11:2316394 9.60E-92 dispersed
Chy11g00245 Chy-Chr11:2316394 Chy11g01576 Chy-Chr11:22313686 6.44E-70 dispersed
Chy11g00245 Chy-Chr11:2316394 Chy02g00297 Chy-Chr2:1939671 1.77E-57 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g185 . . . . . . . . . . Cma02g00268 Cma20g00741 . Car20g00643 . . . . . . . . . . . . . . . . . . Cone8ag1299 . . Lsi10g00505 . Chy11g00245 . . . . . . . . . Sed01g0181 Cmo02g00265 Cmo20g00739 . . . . Cpe16g00324 Cpe05g01364 Bhi10g01827 Tan05g1113 Cmetu11g1096 . Hepe08g0306 . . Cla02g01179 Cam02g1258 Cec02g1267 Cco02g1307 Clacu02g1240 Cmu02g1207 Cre02g1522 . Csa02g01404 . Cme11g01081
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005071 2 3 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00245 Chy_Chr11 FPKM 5.096385 5.161048 6.129605 6.28159 8.86697 8.754098 7.9576 8.922326 8.958608 8.887667