Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00247 ATGCAATGGGCCACTCAACGTAGGTACAGCCCATATCCTCAGCCAAAGCTAATGGGCCTAAGGCCCATCAGTTTTTTTGGAGTTTCAATGTGTGAAGTCTTTGTTGTTGGAGATGAAGATGGCTGGAATTCTGGCACCAATTTTGCTACTTGGTCTCAATCCCATAATTTCACCAAAGGAGATTTTCTAGTTTTCAATTATGCAAAGAATGTACACAATGTGTATGAAGTTATTGAAGAGACATATAGATCTTGTGAGGCAAAGAATGGAGTATTGGGTGAATATGATAGTGGAAATGATAAAATTGAACTCAAAGAAGCAAGAAATTATTGGTTCATTTGTAATGTGGCTGGTCATTGCTTGGGTGGAATGAGGTTTGGAATTGTGGTTAAAGAATCCAATTCTTCTACTCATCTTCCACTTAATCCTATTGATCAATCTCCTCCTCCAAACACCAACCATGCTTCCATTTGTTGTGGAAGAGATATTGAAACATTAATAAAGGAGGATGACGAAAAGAAGAGAGATGATGAAAAAGTGAGACGTGAAGGTTAG 555 38.2 MQWATQRRYSPYPQPKLMGLRPISFFGVSMCEVFVVGDEDGWNSGTNFATWSQSHNFTKGDFLVFNYAKNVHNVYEVIEETYRSCEAKNGVLGEYDSGNDKIELKEARNYWFICNVAGHCLGGMRFGIVVKESNSSTHLPLNPIDQSPPPNTNHASICCGRDIETLIKEDDEKKRDDEKVRREG* 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2336000 2342743 + Chy11G188270.1 Chy11g00247 236008

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00247 184 PANTHER BLUE COPPER BINDING PROTEIN-LIKE 29 134 - -
Chy11g00247 184 SUPERFAMILY Cupredoxins 32 131 IPR008972 -
Chy11g00247 184 Gene3D - 30 137 IPR008972 -
Chy11g00247 184 PANTHER BLUE COPPER PROTEIN 29 134 IPR039391 GO:0009055
Chy11g00247 184 Pfam Plastocyanin-like domain 42 124 IPR003245 GO:0009055
Chy11g00247 184 CDD Phytocyanin 33 130 - -
Chy11g00247 184 ProSiteProfiles Phytocyanin domain profile. 32 132 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00247 - - - csv:101221400 335.495
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00247 Chy-Chr11:2336000 Chy11g00587 Chy-Chr11:6693797 2.07E-22 dispersed
Chy11g00247 Chy-Chr11:2336000 Chy03g01346 Chy-Chr3:16409782 5.28E-21 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g175 . . . . . . . . . . . Cma20g00745 . Car20g00647 . . . . . . . . . . . . . . . . . . Cone8ag1293 . . Lsi10g00502 . Chy11g00247 . . . . Bda14g00622 Bpe15g00805 . . . Sed01g0184 . Cmo20g00742 . . . . Cpe16g00322 . Bhi10g01832 Tan05g1117 Cmetu11g1432 . Hepe08g0303 . . Cla02g01176 Cam02g1255 Cec02g1264 Cco02g1303 Clacu02g1237 Cmu02g1204 Cre02g1519 . Csa02g01401 . Cme11g00372
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013153 1 1 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 27
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00247 Chy_Chr11 FPKM 18.641155 22.595854 20.73407 20.589794 14.306163 12.46112 15.313453 20.973232 19.528822 21.250631