Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00251 ATGGACAGGCTTCTGTATTCTCCTTCTCCAACCCCTTTAAAACCCCATCTCAACCGTCTTCCTCATCTTCCTCGACTCGCTCGCATTGACCCATCAAAGCTCCATTTCCCTTCACCAACTCGTTCAGAGTTTGCTGGAGTTCATTCGTTCTCTTCCAGAAACGAAAACCCAATTCTATCTTCTTCTTCTCTGCCTATTTCTTCCAATACTTTGCTATCTCTGAATGATTCTCGAGATGGGTCGGTGCCAAAACCTCAGTTTCATCAGCAGATTGAAAATTTTCCCTCAGGTGAACGAAAGGCAAAAATTACCAAGACATTTATGGCACTCTGTGTTGCTATTCTGGTCTTGATCCAACCAGTTTTTGCACCTTCAGCTTTTGCGTACTCTGCAGCTACAACTGGGGGTCCATCGGCTGCCGCCTTCGGAGGAAGATTTTTCCGATCTGAACTATTGAGCAGTGCTTGGACTGGTTTCTTTGCCGGATGTTTACACACATTATCTGGGCCAGACCATCTTGCTGCTTTGGCACCCCTTTCCATTGGGCGTACTCGCATGGAAAGTGCTGCTGTTGGAGCTCTTTGGGGCTGCGGCCATGACGCAGGTCAAGTTATCTTTGGCCTCATATTTCTTCTATTGAAAGACCGGCTTCATATCGAAATTATTCGTACTTGGGGCACAAGAGTCGTCGGTATTACTCTGCTTGTAATCGGTGCCTTAGGTATTAGGGAGGCTACAGAGGTTCCTACTCCTTGCGTCGCCTTAGACAATGGCGAGTGTGATGTTAGTATTTATGAAGCATTAGAGAATCCATCAGAAGGCAAGAAGAAGATAGGTTTTGCAACTTTCGCGACAGGTATTGTCCACGGGCTACAACCAGATGCTTTGATGATGATATTACCTGCGCTTGCACTGCCATCTCGAGTGGCTGGAGCTGCATTTCTTGTGATGTTTTTGGTAGGTACTGTAGTTGCAATGGGAAGTTATACAGTGTTCATAGGTTCTTGTACTCAGGCATTAAAGGAGAGAGTGCCCAGGATTACTGAGAAGCTCACCTGGGCTGCTTCCTCTATAGCAATTGCTCTTGGATTTGCCATTCTCATCAGCCAGTATTTTGGGTTTAGCCTCTACTAA 1134 46.12 MDRLLYSPSPTPLKPHLNRLPHLPRLARIDPSKLHFPSPTRSEFAGVHSFSSRNENPILSSSSLPISSNTLLSLNDSRDGSVPKPQFHQQIENFPSGERKAKITKTFMALCVAILVLIQPVFAPSAFAYSAATTGGPSAAAFGGRFFRSELLSSAWTGFFAGCLHTLSGPDHLAALAPLSIGRTRMESAAVGALWGCGHDAGQVIFGLIFLLLKDRLHIEIIRTWGTRVVGITLLVIGALGIREATEVPTPCVALDNGECDVSIYEALENPSEGKKKIGFATFATGIVHGLQPDALMMILPALALPSRVAGAAFLVMFLVGTVVAMGSYTVFIGSCTQALKERVPRITEKLTWAASSIAIALGFAILISQYFGFSLY* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2365235 2368869 + Chy11G188310.1 Chy11g00251 236012

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00251 377 Pfam Cytochrome C biogenesis protein transmembrane region 205 349 IPR039447 -
Chy11g00251 377 PANTHER UNNAMED PRODUCT 1 377 - -
Chy11g00251 377 PANTHER EXPRESSED PROTEIN 1 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00251 - - - csv:101219983 689.108
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy01g00678 Chy11g00251 CCT
Chy01g00678 Chy11g00251 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g01704 Chy-Chr2:17324747 Chy11g00251 Chy-Chr11:2365235 3.00E-51 transposed
Chy09g00514 Chy-Chr9:5172789 Chy11g00251 Chy-Chr11:2365235 5.72E-74 transposed
Chy10g00196 Chy-Chr10:4893044 Chy11g00251 Chy-Chr11:2365235 3.07E-55 transposed
Chy01g00678 Chy-Chr1:4911980 Chy11g00251 Chy-Chr11:2365235 5.96E-155 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g167 . . . Bda08g00988 . Bpe12g00124 Bma05g00372 . Cmo19g00751 Cmo11g01743 Cma02g00262 . . . Sed04g3849 Cpe04g00595 Cpe15g00596 Bhi05g01709 Tan02g0679 Cmetu01g0520 . Hepe02g0422 . . Cla02g00424 Cam02g0433 Cec02g0431 Cco02g0449 Clacu02g0434 Cmu02g0429 Cre02g0763 . Cone8ag1288 . Cone10ag1176 Lsi10g00499 Csa07g00105 Chy11g00251 Cme01g01258 . Blo13g00502 Bda15g01031 . . Bpe05g00292 . . Sed05g3503 Cmo02g00259 . Cma11g01378 Cma19g00742 . Car19g00571 . Cpe05g01369 Bhi10g01840 Tan05g1124 Cmetu11g0635 . Hepe08g0298 . . Cla02g01172 Cam02g1251 Cec02g1261 Cco02g1299 Clacu02g1233 Cmu02g1199 Cre02g1515 Lsi11g01203 Csa02g01397 Chy01g00678 Cme11g00376
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001667 2 2 4 2 2 2 3 2 2 4 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 2 3 2 69
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00251 Chy_Chr11 FPKM 55.426949 57.563316 49.882015 45.750401 71.774986 71.079788 71.180664 102.308792 110.209251 100.429565