Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00253 ATGGAAGATGGGGAGCTTGAATCCTCAAACCCGGAAGTGTTTTCGAGTTCGAATGCCATTGAGCTTCCGAGTAGTTGCTCAATGGATAGCTTCTTTGATGAAATTCTGAAGGATACTCATGCTTGTACACATGCTCATACTTGCAACCCTCCTGGTCCTGATTATTCACATACACATACCTGTTTTCATGTTCATACGAAAATTGTTTCTTCCCCCACCGAAGAAAAGGTTTCCACTGATGATACAGCGGATTCTGTGGATAAAAAGAATAAGAAGCGCCCATTAGGTAATCGTGAAGCAGTTCGTAAATACCGGGAGAAGAAAAAGGCAAGGGCTGCCTCATTGGAAGATGAAGTTGTGAGATTGAGAGCCCTGAATCAGCAACTGTTGAAGAGATTGCAAGGTCAGGCTGCATTGGAGGCTGAGATTTCTAGGCTCAAATGTTTGCTTGTGGATATTCGGGGAAGAATTGAAGGGGAGATTGGAAACTTTCCATATCAGAAACCAGCCAATTCAAATCCGCCCAATCAGAATGTGTCTGGTAGTTACATGATAAATCCATGTAATGTGGAATGCAATGATCAGGCATATTGCCTTCATCCAGGGCATGATGGAAAAAGTGGAGAGAGCGCTTTGTTGAATGGGCAAAGTTTTAGTTCATGTGACTTTGAAAATCTTCAGTGCTTGGCAAATCAAAACACGGGAGCAAAGGAACCTCCTGACTGTGGACTGGGAAACACAATTGCTAACGTTAATTGTGCAGAAATAAATCCGAAGAAAGAACTAGGAAATGGTGGGATTTCAGTACCTGAGCCATATCAAAACACCTCAAGGAAACTTAGATCTGCCATTCAAGATCATGCTGCTCAATCCAGTACTAATAATAATTATGATCATCTTCTACTATTGCAGCAGTACTCTTTGACTCAATCTGATCTTCATCAATCTCTCACCTCTCTCGTCTCTGAAATGCCTGCCGATCACATCGATCGATTCATTCGATTACAGAGTGAGAGATTTAGATTACTTCTACAACAAAAGATTAATCAACAAATCGGAGTGTTGTTGAACCAGATCGAAACAAGAACGCGCGTTCTGTTTCAGCAGAAGGATGAAGAGATCGCTTGTGCGAATATGAGAAGAATGCATCTCGAACAATTATTGACGAGATTACAAATGGAGAATCAAGAACGGAAGAAATCCGTACAAGAGAATCAAGCAATGGTAGCCTCGCTTAGTCGCGCACTCAATCAAATCAGAGAAAAAGTTTCATTATCCGCGAACGACGCTGAATCTAACAACAACAACAACAATAACAACTACAGAAACGGAGAAGACGACGCCATTGATTACGGAAAAAAGAAGAAAAAGAAGAAGAAAATGATGATTTGTAAAATCTGCAACTCTCGAGTTTCGTGCGTTCTGTTGTTGCCTTGCAGGCACCTCTGTTCGTGTAAGCCATGCGAGAGTACTCTCGATTTTTGCCCCGTCTGCAACACGACGAAGAAAGCCAGCATCGAGGCTGTGATTTTCTAG 1536 41.99 MEDGELESSNPEVFSSSNAIELPSSCSMDSFFDEILKDTHACTHAHTCNPPGPDYSHTHTCFHVHTKIVSSPTEEKVSTDDTADSVDKKNKKRPLGNREAVRKYREKKKARAASLEDEVVRLRALNQQLLKRLQGQAALEAEISRLKCLLVDIRGRIEGEIGNFPYQKPANSNPPNQNVSGSYMINPCNVECNDQAYCLHPGHDGKSGESALLNGQSFSSCDFENLQCLANQNTGAKEPPDCGLGNTIANVNCAEINPKKELGNGGISVPEPYQNTSRKLRSAIQDHAAQSSTNNNYDHLLLLQQYSLTQSDLHQSLTSLVSEMPADHIDRFIRLQSERFRLLLQQKINQQIGVLLNQIETRTRVLFQQKDEEIACANMRRMHLEQLLTRLQMENQERKKSVQENQAMVASLSRALNQIREKVSLSANDAESNNNNNNNNYRNGEDDAIDYGKKKKKKKKMMICKICNSRVSCVLLLPCRHLCSCKPCESTLDFCPVCNTTKKASIEAVIF* 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2378919 2385988 - Chy11G188330.1 Chy11g00253 236014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00253 511 Coils Coil 384 422 - -
Chy11g00253 511 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 87 134 IPR004827 GO:0003700|GO:0006355
Chy11g00253 511 PANTHER CCAAT/ENHANCER BINDING PROTEIN 1 240 - -
Chy11g00253 511 SMART brlzneu 85 152 IPR004827 GO:0003700|GO:0006355
Chy11g00253 511 MobiDBLite consensus disorder prediction 77 96 - -
Chy11g00253 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 432 509 IPR013083 -
Chy11g00253 511 PANTHER BASIC LEUCINE ZIPPER 23 1 240 - -
Chy11g00253 511 MobiDBLite consensus disorder prediction 72 96 - -
Chy11g00253 511 Pfam Basic region leucine zipper 87 142 IPR004827 GO:0003700|GO:0006355
Chy11g00253 511 ProSiteProfiles Zinc finger RING-type profile. 464 499 IPR001841 -
Chy11g00253 511 Coils Coil 98 132 - -
Chy11g00253 511 SUPERFAMILY Leucine zipper domain 89 135 IPR046347 GO:0003700|GO:0006355
Chy11g00253 511 Gene3D - 75 153 - -
Chy11g00253 511 MobiDBLite consensus disorder prediction 426 449 - -
Chy11g00253 511 MobiDBLite consensus disorder prediction 426 444 - -
Chy11g00253 511 Pfam Zinc finger, C3HC4 type (RING finger) 463 501 - -
Chy11g00253 511 CDD bZIP 91 144 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy01g00682 Chy11g00253 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00143 Chy-Chr7:1237203 Chy11g00253 Chy-Chr11:2378919 4.70E-16 dispersed
Chy11g00253 Chy-Chr11:2378919 Chy01g00750 Chy-Chr1:5556542 6.70E-06 dispersed
Chy01g00682 Chy-Chr1:4948386 Chy11g00253 Chy-Chr11:2378919 5.00E-140 transposed
Chy01g00679 Chy-Chr1:4917315 Chy11g00253 Chy-Chr11:2378919 4.38E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18673 PF07716 bZIP_2 2.90E-14 CL0018 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00253 K25785 - csv:101219501 523.472