Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00258 ATGGAAACTCGGAGCAGAAAGCGGGCGGAGGCCTCCTCAGCAGCCCCTTCTTCTTCGTCTTCTGGTCCCACTACTCGTTCTACCAAGCGCGCTCGTCTTTCTGCTACTTCTTCATCGAATCTTGCTGCTGCATCTACACTTTCGATCTCTACACGTTCTCGCTCTACCCGAACCCAAGAACCGTCTGCCACTACTACTCCAATGGACTCGACTAATGAATCATCTGGGTCACGCCGACGTGGGAAGAATTCTGATAAAGAGAACTCGGATAAGGGGAAGGAGAAGGAACATGAGGTTAGGATTGGGGATAGAGAAAGAAATGCTGACCAGAGCTTTGGGTTGAATATTGAAGGGAGTGGCGGTGGGGAGGATGATGATAATGATAGTGAAGGAGGAATGGGAGTCTTGCAGCAGAATTTATCCACTGCTAGTAGTGCCCTTCAAGGACTTCTCAGGAAACTCGGTGCTGGATTGGATGATTTGCTTCCATCTTCTGCTATTGCATCGGCTTCATCCTCACAGCAGAGAGGGCGGCTTAAGAAAATCTTATCTGGGTTGAGAGCGGATGGAGAAGAAGGGAAGCAGGTTGAGGCATTGACACAACTATGTGAGATGCTTTCAATCGGGACTGAGGAGTCTCTAAGTACTTTCTCTGTTGATTCTTTTGTCCCTGTCCTTGTTGGGTTGCTTAATCACGAAAGCAATCCTGATATAATGCTTCTAGCGGCTAGGGCACTAACCCATCTGTGTGATGTTCTCCCTTCATCATGTGCTGCTGTCGTGCACTATGGTGCTGTTCCCTGCTTCTGTGCGAGATTGCTGACTATAGAATACATGGACCTAGCTGAACAGTCCCTGCAAGCTTTAAAGAAGATATCCCAGGAACACCCTACTGCTTGCCTGCGGGCTGGTGCTCTCATGGCTGTGCTGTCGTATTTAGATTTCTTCTCTACAGGAGTTCAGCGAGTTGCATTGTCCACTGCTGCGAATATGTGCAAGAAGCTTCCTTCAGATGCAGCTGACTTTGTGATGGAAGCTGTTCCTCTGCTGACAAACCTTCTTCAGTATCATGATGCAAAAGTGTTGGAGCACGCTTCAGTTTGTTTGACTCGTATTGCGGAGGCCTTTGCATCATCTCCTGATAAATTAGATGAACTATGTAACCATGGACTTGTTACGCAAGCTGCCTCACTTATTTCCTCCAGCAGTACTGGAGGTGGACAGTCAACTCTGGGATCAGCTACTTACACTGGATTAATCCGACTTCTTTCCACATGTGCAAGTGGATCTGCCTTGGGTGCAAAAACTTTGCTGCTTCTTGGGATCAGTGGCATTCTTAAAGATATATTATCTGGTTCTGGCGTGTCTACTAATGCATCTGTTTCGCCTGCATTAAATAGACCACAAGAGCAGATTTTTGAGATAGTCAACTTGGCAAATGAGCTTCTACCTCCTCTACCTCAAGGAACTATTTCCTTTCCACCCAACTTTAATATGCTTGTGAAAGGACCAGTCATCAAGAAGCCATCTACTAGTGGTTCTGTGAAAGAAGAAGATCCAACTGATAGTGCTCCAGAAGTGTCAGCTCGTGAGAAACTCTTAAAGGATCAGCCAGAGCTCCTCCTCCAGTTTGGAATGGATCTCCTTCCTATTTTAATACAGATCTATGGTTCCAGTGTGAGTGGTCCAGTACGTCATAAATGTCTCTCTGGAATTGGAAAATTGATGTACTTCAGCACTCCAGAGATGATACAATCATTATTGAATGTGACTAATATAGCAAGTTTTCTAGCTGGTGTTTTGGCATGGAAAGATCCACATATTTTGATTCCTGCTCTCCAAATTGCTGAGATTCTTATGGAAAAGCTTCACGAAACATTTTCTAAGATGTTCCTTCGTGAGGGCGTTGTTTATGCTGTTGACCAGCTTATCTTGGCTAATAACCAAAATACTTCTTCCCAAGCGGCTTCTGTTGAGAAGGATAGCACCTCTGCATCTGGAACTTCATCACGCACTCGTCGTTATAGGCGGCGTAGTGGAAATATGAACTCAGATGGAAGTTCACTGGACGAAAACAAGAATTCTGTATCTGGAAGTGGTGTTCCACACGGTTCGGTGGAGGTTCCATCAATTAATTCTAATCTCCGATCTTCTGTAAGTTCCTGTGCCAATGCATTTAAAACTAAGTATTTCCCCTTAGATCCGGGAGATGTTGAAGTTGGAGTTACAGATGATCTCTTACGTCTGAAGAATCTTTGTTTCAAGTTGAATGCTGGTATTGATGATCAGAAGAGTAAATCGAAAGGAAAGTTGAAAGCGTCGGGGTCTCGCTTAGATGATATTATTACAAATAAGGAAGAGTATTTAACTGGCGTGATATCTGAAATGCTAGTTGAATTGGGCAAAGATGATGGTGTTTCCACCTTTGAGTTTATTGGTAGTGGTGTCGTTGGAGTTCTGCTTAACTACTTTTCTTGTGGATACTTTTCTAAAGGAAGAATTTCGGATGTCGAGTTGCCAAAGCTTCGGCAACAAGTGCTTAAAAGATTTAAATCATTTATTTCTGTTGCCCTTCCTGCTAGCATTAATGAAGGAACAGTAGCTCCTATGACAGTCTTAGTTCAAAAGCTGCAGAGTGCTTTATCGTCGCTGGAGCGTTTTCCAGTTGTCCTGAGCCATTCTTCTAGATCTTCCAGTGGTAGTGCCCGGCTTTCCTCTGGGCTTAGTGTATTATCTCAGCCATTTAAGTTACGACTTTGTCGAGCTCAGGGAGAAAAATCACTTCGTGATTATTCATCAAATATTGTTCTGATCGATCCATTGGCAAGTTTAGCAGCTGTTGAAGAGTTTCTGTGGCCTAGAGTTCAGAAAAGTGAATCTGGTCAGAAACCTTCAGCATCTGGTGCAAACTCAGATTCAGGAACTACGCCTTCAGGAAATGTTGCTCCATCAGGGTTAAATTCAACCCCGAGTTCAACCGCTCGTCGTTACTCTACTAGGTCTAGATCATCGATGACTATTGGAGAAAGAGCAGGGAAGGAATCTTCACAGGAGAAAAGCACATCAAAGGGGAAGGGGAAAGCTATTCTAAAGCCTGCCTGGGAGGAGAAGAGAGGCCTGCAAACTAGAAGTTCTACTCGTAGAAGAGCAGCTGTGGACAAGGATGCACAAATGAAGCCTGTAAATGGAGAGACTACGTCTGAGGATGAAGAATTGGACCTATCCTCTATCCAGATTGATGATTCCTTAGTGATTGAGGATGATGATATTTCTGATGATGAAGACGATGATCACGATGATGTGCTGCAGGATGATTCTCTTCCTCTTTGCATGCCTGAAAAGGTGCATGATGTCAAATTGGGCGACACAGTTGAAGATGGGGATGCTGGTCCAGCTACAAGTGATGGTCAGATTCATTCAACATTTGGCTCTAGTAGCAGAGCTGCTACAGTCAGGGGTTCTAGTTCTCCTGATCATAGGAGTGGAAATTCTTTTAGTTCGAGAGGAGGTATGTCATTTGCTGCTGCTGCGATGGCTGGGCTCGGACCAGCCAATGGCAGAGGTTTCCGTGGAGGTCGGGATCCACAGGGACGCCCTCTTTTTGGTGGTTCCAATGACAACCCAAAATTACTTTTTTCTTCTGGTGAGAAGCAGCTTGATAGGCATTTGACAATATACCAAGCTGTTCAACGTCAGCTTGTTTTGAATGAAGACGATGATGAGAGGTTTGCTGGTGCTGGAAGCGATTTCTTGTCTAATGATGGGAGCAGTTTATGGGGTGATATATATACTATTACATATCAGAGGGCAGATAATCAATCTGAAAGAGCTGTTTTAGCTGGGGAATCAAGCTCTTCAAAATCTAAATCCACCAAATGTGTATCAACTTCCAATTCAAATTCAGAGTCTCAATTCCATCAAATGTCACTTTTAGATAGTATTTTACAAGGAAAACTTCCATGTGATTTTGACAAATCTAATTCTACATATGATATACTATCTTTATTGCGTGTACTTGAGGGATTGAATCAGCTTGCTCCGCGCTTAAGGGCACAAATTGTGTCAGATCAATTTGCAGAGGGAAAAATCACTGCGCTTGATGAATTGGGTGGAGTTGGTGGAAAGGTTCCTCATGAGGAATTTATCAACAACAAACTTACTCCCAAGTTGGCTCGACAGATTCAGGATGCTCTTGCACTATGCAGTGGGAGTCTTCCCTCATGGTGCTACCAATTGACTAAGGCATGTCCGTTCTTATTTCCTTTTGAGACCCGCCGGCAATATTTCTATTCAACTGCATTTGGGTTGTCACGTGCATTGTATCGGCTACATCAGCAGCAAGGAGCTGATGGTCTTGGAACAGTAAATGAACGAGAGGGAAGGGTCGGAAGATTGCAGCGCCAGAAGGTTCGTGTCTCCCGTAATCGTATATTGGATTCGGCTGCAAAAGTTATGGAGATGTATTCCAGCCAGAAGGCTGTTCTTGAAGTTGAATATTTTGGTGAAGTGGGAACTGGATTAGGTCCGACCCTTGAGTTCTACACACTTCTAAGTCATGAACTGCAGAGGGCTGGACTCGGAATGTGGAGGTCTAATTCATTGCAAGAGTCAACAGACAGTGGTGAAGATGGACAAGCTAGGAAGCCTAAAGGTGGCTCTAGGCTTACTTCTGATGCAGCCAATATTGATATTATTCAATCACCTCTTGGGTTGTTTCCTCGACCTTGGCCAGCAAATGCTGATTCTTCTGATGGCAGCCAATTTTCGAAGATTATTGAATATTTCCGGCTTGTTGGTCGTGTGATGGCCAAAGCTCTCCAAGATGGAAGACTGTTGGATCTACCGCTCTCAACAGCATTTTATAAGCTTGTTCTTGGTCAAGATCTTGATTTACATGATATCCTCTCATTTGATGCTGAGCTTGGGAAGACTTTACAAGAATTGCAGGCTCTTGTTTGCCGGAAGCAGTATTTAGGATCGTTAAATGGTGATAATCAAAATACAATTTCCAACTTGACTTTCCGTGGGATTCCAGTTGAAGACCTTTGCTTGGATTTTACAGTTCCTGGTTATCCAGACTACGTGTTGAGACCAGGAGATGAAACTGTTAATATTCATAACTTGGAGGAGTACATATCCTTAGTATTAGATGCGACTGTCAAGACTGGAATAATGCGGCAAATGGAAGCATTTACTGCAGGATTCAATCAGGTGTTCGACATCACAGCATTACATATATTCATTCCTCATGAATTGGACCATTTGCTATGTGGCCGTAGAGAATTGTGGAAGGCTGACACACTGGTGGATCATATTAAATTTGATCATGGATACACAGCCAAGAGTCCTGCAATAGTCAATTTTCTTGAAATTATGGGAGAATTCACACCGGAGCAGCAGCGAGCATTCTGCCAGTTTGTTACAGGTGCACCTAGGCTTCCACCAGGTGGCCTTGCAGTGTTGAACCCAAGATTGACTATTGTGAGAAAGCACTCATCAACAGCAACGAATGCAGCAAACAGCGCCACAGGGGCTTCTGAGTCAGCAGATGATGATTTGCCTAGTGTCATGACATGCGCCAATTACCTTAAGCTTCCTCCATACTCGACCAAGGAAATAATGTACAAGAAACTAATCTATGCGATCAATGAGGGGCAGGGATCGTTTGATTTGTCATGA 5679 43.99 METRSRKRAEASSAAPSSSSSGPTTRSTKRARLSATSSSNLAAASTLSISTRSRSTRTQEPSATTTPMDSTNESSGSRRRGKNSDKENSDKGKEKEHEVRIGDRERNADQSFGLNIEGSGGGEDDDNDSEGGMGVLQQNLSTASSALQGLLRKLGAGLDDLLPSSAIASASSSQQRGRLKKILSGLRADGEEGKQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVPCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDELCNHGLVTQAASLISSSSTGGGQSTLGSATYTGLIRLLSTCASGSALGAKTLLLLGISGILKDILSGSGVSTNASVSPALNRPQEQIFEIVNLANELLPPLPQGTISFPPNFNMLVKGPVIKKPSTSGSVKEEDPTDSAPEVSAREKLLKDQPELLLQFGMDLLPILIQIYGSSVSGPVRHKCLSGIGKLMYFSTPEMIQSLLNVTNIASFLAGVLAWKDPHILIPALQIAEILMEKLHETFSKMFLREGVVYAVDQLILANNQNTSSQAASVEKDSTSASGTSSRTRRYRRRSGNMNSDGSSLDENKNSVSGSGVPHGSVEVPSINSNLRSSVSSCANAFKTKYFPLDPGDVEVGVTDDLLRLKNLCFKLNAGIDDQKSKSKGKLKASGSRLDDIITNKEEYLTGVISEMLVELGKDDGVSTFEFIGSGVVGVLLNYFSCGYFSKGRISDVELPKLRQQVLKRFKSFISVALPASINEGTVAPMTVLVQKLQSALSSLERFPVVLSHSSRSSSGSARLSSGLSVLSQPFKLRLCRAQGEKSLRDYSSNIVLIDPLASLAAVEEFLWPRVQKSESGQKPSASGANSDSGTTPSGNVAPSGLNSTPSSTARRYSTRSRSSMTIGERAGKESSQEKSTSKGKGKAILKPAWEEKRGLQTRSSTRRRAAVDKDAQMKPVNGETTSEDEELDLSSIQIDDSLVIEDDDISDDEDDDHDDVLQDDSLPLCMPEKVHDVKLGDTVEDGDAGPATSDGQIHSTFGSSSRAATVRGSSSPDHRSGNSFSSRGGMSFAAAAMAGLGPANGRGFRGGRDPQGRPLFGGSNDNPKLLFSSGEKQLDRHLTIYQAVQRQLVLNEDDDERFAGAGSDFLSNDGSSLWGDIYTITYQRADNQSERAVLAGESSSSKSKSTKCVSTSNSNSESQFHQMSLLDSILQGKLPCDFDKSNSTYDILSLLRVLEGLNQLAPRLRAQIVSDQFAEGKITALDELGGVGGKVPHEEFINNKLTPKLARQIQDALALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLHQQQGADGLGTVNEREGRVGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLLSHELQRAGLGMWRSNSLQESTDSGEDGQARKPKGGSRLTSDAANIDIIQSPLGLFPRPWPANADSSDGSQFSKIIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQDLDLHDILSFDAELGKTLQELQALVCRKQYLGSLNGDNQNTISNLTFRGIPVEDLCLDFTVPGYPDYVLRPGDETVNIHNLEEYISLVLDATVKTGIMRQMEAFTAGFNQVFDITALHIFIPHELDHLLCGRRELWKADTLVDHIKFDHGYTAKSPAIVNFLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPRLTIVRKHSSTATNAANSATGASESADDDLPSVMTCANYLKLPPYSTKEIMYKKLIYAINEGQGSFDLS* 1893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2411806 2421592 - Chy11G188380.1 Chy11g00258 236019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00258 1892 MobiDBLite consensus disorder prediction 512 529 - -
Chy11g00258 1892 MobiDBLite consensus disorder prediction 10 74 - -
Chy11g00258 1892 CDD HECTc 1468 1887 IPR000569 GO:0004842
Chy11g00258 1892 MobiDBLite consensus disorder prediction 1134 1168 - -
Chy11g00258 1892 MobiDBLite consensus disorder prediction 958 1011 - -
Chy11g00258 1892 Pfam HECT-domain (ubiquitin-transferase) 1516 1892 IPR000569 GO:0004842
Chy11g00258 1892 MobiDBLite consensus disorder prediction 1110 1124 - -
Chy11g00258 1892 MobiDBLite consensus disorder prediction 681 710 - -
Chy11g00258 1892 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 49 1892 IPR045322 GO:0006511|GO:0061630
Chy11g00258 1892 ProSiteProfiles HECT domain profile. 1492 1892 IPR000569 GO:0004842
Chy11g00258 1892 MobiDBLite consensus disorder prediction 75 107 - -
Chy11g00258 1892 MobiDBLite consensus disorder prediction 1012 1055 - -
Chy11g00258 1892 MobiDBLite consensus disorder prediction 1067 1102 - -
Chy11g00258 1892 MobiDBLite consensus disorder prediction 1276 1300 - -
Chy11g00258 1892 SMART arm_5 210 251 IPR000225 GO:0005515
Chy11g00258 1892 SMART arm_5 253 294 IPR000225 GO:0005515
Chy11g00258 1892 SMART arm_5 336 374 IPR000225 GO:0005515
Chy11g00258 1892 MobiDBLite consensus disorder prediction 1 135 - -
Chy11g00258 1892 SUPERFAMILY ARM repeat 79 657 IPR016024 -
Chy11g00258 1892 MobiDBLite consensus disorder prediction 509 529 - -
Chy11g00258 1892 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 49 1892 - -
Chy11g00258 1892 SUPERFAMILY Hect, E3 ligase catalytic domain 1460 1885 IPR035983 GO:0004842
Chy11g00258 1892 Gene3D Hect, E3 ligase catalytic domains 1408 1654 - -
Chy11g00258 1892 Gene3D - 180 661 IPR011989 -
Chy11g00258 1892 MobiDBLite consensus disorder prediction 654 710 - -
Chy11g00258 1892 MobiDBLite consensus disorder prediction 1532 1555 - -
Chy11g00258 1892 SMART hect_3 1479 1892 IPR000569 GO:0004842
Chy11g00258 1892 MobiDBLite consensus disorder prediction 957 1168 - -
Chy11g00258 1892 MobiDBLite consensus disorder prediction 1185 1207 - -
Chy11g00258 1892 MobiDBLite consensus disorder prediction 654 670 - -
Chy11g00258 1892 Gene3D Hect, E3 ligase catalytic domain 1763 1890 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00258 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - csv:101218793 3377.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02093 Chy-Chr4:26313059 Chy11g00258 Chy-Chr11:2411806 5.67E-124 dispersed
Chy06g01892 Chy-Chr6:22772035 Chy11g00258 Chy-Chr11:2411806 3.78E-31 dispersed
Chy11g00258 Chy-Chr11:2411806 Chy11g01547 Chy-Chr11:22018713 9.32E-16 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00258 Chy_Chr11 FPKM 1.305296 2.364744 2.010531 2.512351 3.812849 2.721011 4.04902 2.39269 1.124573 1.642129