Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00269 ATGCCTCCTTCTCTTGATCGCCTTTCTCATTTTCCTCGTTTTCGCGCTCTTCACTCACAATCAAGTATGTTTTCTTCCCTTTTGAGGATTCGTATTCCTGATTCTGTTTCGGATCTGGTTGCCGATAATTTTAATAGGGAAGAGAAACAAGAAGAAGAGCCTGAAATTACTCACAGGGTTTTCTTGGATGTTGATATTGAAGAACAGAGATTAGGTAGAATCGTGATTGGATTATATGGGCAGGTTGTACCCAAAACTGTAGAAAATTTCAGGGCTCTATGCACAGGGGAGAATGGTAAAACTACAAGTGGAAAAGCACTCCATTATAAAGGAACACCATTCCACCGTATCGTATCTGGTTTCGTGATTCAAGGTGGTGATATTTTATATGGTGATGGAAAAGGATATGAATCAATTTATGGTGGTACATTTGCTGATGAGAACTTCAGAATAAAACATTCACATGCAGGTGTTGTCTCCATGGTAAACTCAGGACCTGATTCAAATGGCTCACAATTTTTCATTACCACCATTAAGTCCAGCTGGTTAGATGGAGAGCACGTCGTCTTTGGCAAGGTTATCCAAGGAATGGACTACGTATATGCAATTGAAGGCGGAGCAGGAACCTATAGCGGGAAACCTAGAAAGAAGGTTACCATTGCTGACAGTGGGGAGATACCCAAGAGCAAGTGGGATGAGGAAGCATGA 708 41.53 MPPSLDRLSHFPRFRALHSQSSMFSSLLRIRIPDSVSDLVADNFNREEKQEEEPEITHRVFLDVDIEEQRLGRIVIGLYGQVVPKTVENFRALCTGENGKTTSGKALHYKGTPFHRIVSGFVIQGGDILYGDGKGYESIYGGTFADENFRIKHSHAGVVSMVNSGPDSNGSQFFITTIKSSWLDGEHVVFGKVIQGMDYVYAIEGGAGTYSGKPRKKVTIADSGEIPKSKWDEEA* 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2494595 2497490 - Chy11G188490.1 Chy11g00269 236030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00269 235 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 61 225 IPR002130 GO:0000413|GO:0003755
Chy11g00269 235 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 39 234 - -
Chy11g00269 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 114 126 IPR002130 GO:0000413|GO:0003755
Chy11g00269 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 172 184 IPR002130 GO:0000413|GO:0003755
Chy11g00269 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 185 200 IPR002130 GO:0000413|GO:0003755
Chy11g00269 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 157 172 IPR002130 GO:0000413|GO:0003755
Chy11g00269 235 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 78 93 IPR002130 GO:0000413|GO:0003755
Chy11g00269 235 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 39 234 - -
Chy11g00269 235 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 64 223 IPR002130 GO:0000413|GO:0003755
Chy11g00269 235 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 109 126 IPR020892 GO:0003755|GO:0006457
Chy11g00269 235 SUPERFAMILY Cyclophilin-like 56 226 IPR029000 -
Chy11g00269 235 Gene3D - 44 232 IPR029000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00269 - - - csv:101216978 383.259
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g00427 Chy-Chr10:10199371 Chy11g00269 Chy-Chr11:2494595 8.81E-76 dispersed
Chy11g00269 Chy-Chr11:2494595 Chy11g01811 Chy-Chr11:24451805 1.65E-58 dispersed
Chy11g00269 Chy-Chr11:2494595 Chy11g01353 Chy-Chr11:19796162 8.06E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g142 . Blo15g00374 Bda06g00481 . Bpe07g00720 . Bma05g00416 Bma12g00927 . . Cma02g00244 . . . . . . . . . . . . . . . . . . . . . . . . Lsi10g00483 . Chy11g00269 . . . . . . . . . Sed01g0205 Cmo02g00246 . . . . . . Cpe05g01381 Bhi10g01864 Tan05g1156 Cmetu11g0137 . Hepe08g0282 . . Cla02g01156 Cam02g1232 Cec02g1241 Cco02g1281 Clacu02g1213 Cmu02g1182 Cre02g1491 . Csa02g01379 . Cme11g00391
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012364 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00269 Chy_Chr11 FPKM 10.230661 11.844524 21.43368 24.698044 3.994371 2.942909 3.504335 5.958665 5.950103 5.03223