Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00276 ATGGATCGTCCACTTCCACTCCTTCTCGCCTCTGTTTTCACTCTTCTCCTTCTCTCAGATGTTCAATCGACGTCTTTTAAGTTAATCAACAAGTGTCGTACCACGATTTGGCCTGGTTTGTTATCGGGCGCCGGCACTGCTCAACTGCCCACCACTGGTTTCCCTCTCCACAGCGGCAAATCCAAGATCATTCCGCTTCCTAAATCTTGGTCCGGTCGATTATGGGCTCGAACCCTTTGTGGATTTGATTCAGATGGGAAATTCTCTTGCTTAACCGGCGACTGTGGGTCGGGTAAAGTGGAGTGTATCGGCGGCGGCGCTAAGCCGCCAGCTACTTTGGCGGAGTTCACTCTGAACGGAGCCGATGGGCTTGATTTTTACGACGTGAGTTTGGTCGATGGGTATAATATTCCGATGCTGATAGTGGCTAAAGGTGGGAGGAGAGGAGGTTGCGCGGCGACGGGGTGCTTGGTGGATTTGAACGGGGCGTGTCCGTCAGAGCTGAGAGTAGCGCATAGTGGTGGTGGTGGTGGAAGGAGCGTGGCATGTAGAAGCGCGTGTGAGGCTTTTAATGCTCCGCAATTTTGTTGTAGTGAGGCGTTCTCTACGCCTGACACGTGTCGACCATCGGTATATTCGGAGTACTTTAAATATGCTTGCCCACGCGCGTATAGCTACGCGTATGATGACAAAACTAGCACTTTCACGTGTGCGTCTGCTGATTATCTCATTATATTTTGCCCATTGCCTTACACCAGCCAGAAAGTGTTGAGTGCAAGGAAAGATGGGGCAGAGCTACCGCTCGTGAACAAGACGATGATGTATCTGAGAAGCCGAAGAGCAAACGGCGTGTTATCTGCAGGCAGATAG 870 51.26 MDRPLPLLLASVFTLLLLSDVQSTSFKLINKCRTTIWPGLLSGAGTAQLPTTGFPLHSGKSKIIPLPKSWSGRLWARTLCGFDSDGKFSCLTGDCGSGKVECIGGGAKPPATLAEFTLNGADGLDFYDVSLVDGYNIPMLIVAKGGRRGGCAATGCLVDLNGACPSELRVAHSGGGGGRSVACRSACEAFNAPQFCCSEAFSTPDTCRPSVYSEYFKYACPRAYSYAYDDKTSTFTCASADYLIIFCPLPYTSQKVLSARKDGAELPLVNKTMMYLRSRRANGVLSAGR* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2543293 2546792 - Chy11G188560.1 Chy11g00276 236037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00276 289 CDD TLP-PA 25 247 - -
Chy11g00276 289 PIRSF PR5 2 281 IPR001938 -
Chy11g00276 289 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Chy11g00276 289 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Chy11g00276 289 PRINTS Pathogenesis-related protein signature 238 247 IPR001938 -
Chy11g00276 289 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Chy11g00276 289 Gene3D Thaumatin 24 248 IPR037176 -
Chy11g00276 289 SUPERFAMILY Osmotin, thaumatin-like protein 25 248 IPR037176 -
Chy11g00276 289 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Chy11g00276 289 ProSiteProfiles Thaumatin family profile. 23 248 IPR001938 -
Chy11g00276 289 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 10 259 - -
Chy11g00276 289 Pfam Thaumatin family 30 248 IPR001938 -
Chy11g00276 289 PANTHER OS03G0233200 PROTEIN 10 259 IPR001938 -
Chy11g00276 289 SMART tha2 26 248 IPR001938 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00276 - - - csv:101216503 568.155
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g00409 Chy-Chr4:3653561 Chy11g00276 Chy-Chr11:2543293 2.55E-119 dispersed
Chy06g02207 Chy-Chr6:26259743 Chy11g00276 Chy-Chr11:2543293 7.07E-102 dispersed
Chy06g02234 Chy-Chr6:26443876 Chy11g00276 Chy-Chr11:2543293 1.06E-110 dispersed
Chy11g00274 Chy-Chr11:2532591 Chy11g00276 Chy-Chr11:2543293 5.13E-93 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g138 Blo02g00698 . Bda06g00483 . . . . . . . . Cma20g00764 . Car20g00665 . . . . . . . . . . . . . . . . . . . . Cone10ag1178 Lsi10g00478 . Chy11g00276 . . . . . . . . . Sed05g3598 . Cmo20g00761 . . . . Cpe16g00306 . Bhi10g01870 Tan05g1162 Cmetu11g0544 . . . . Cla02g01152 Cam02g1228 Cec02g1236 Cco02g1277 Clacu02g1209 Cmu02g1178 Cre02g1487 . Csa02g01372 . Cme11g00396
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000237 1 5 5 5 5 4 5 5 5 8 4 5 7 6 6 6 5 6 5 5 5 6 4 5 5 5 5 11 8 3 160
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00276 Chy_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0