Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00287 ATGGATCTTCTCTTCAAGTTCAAGCTCTCTTTTCTTGTCGCATCTCTTCTTTCCGCCACCACCGCGTATGGAGCAGCCCTCATCTCGGGCACTGTCTTTTGTGATCAGTGTAAAGATGGCCAAATATCTTTCTTCGATTTCGATCTTCCCGTCAATGGAGTTAAAGTTACGTTAGCTTGTGGGGATGGAAAAGGAGGATTTTTTAATGTGAGAGACGACGTCACAAATTTTTTAGGAAGCTTTCTGATGAAAGTGGATGGAACGCCTGATCTTAGGGGTTGCACTGCGACGGTTAGTGGAGCCGCACCGGGAGCGAGGACAAACTGTACCGTAGCTGGTGGCCCGCCAAGGAGTCTTAAGTTGGTGTTTAGGTTGTTGAACCTGGAAATGTATTCGCTTGGTGGTCCTTTGTTATCTCAACCTGTTCAACCAAAGCCGTTTTGTAGTCGTCATGTTCCGGTTCCTGGGCCGAAACCACCATCTCCACCGTCTCTGCCGCCCCTTCCAAAACTGCCGCCACTTCCGCCACTTCCCCAACTGCCGCCACTTCCGCCGCTTCCATCGTTTCCACCGCCGATGCGTCAGATGCCGCATATGCCGTTCTTGGAAGCTTCTTCTGCTTGCCAACATGAGAATTGGACAAACCCAGATTACAAATGCTATTGGAGGGCAGTGAACCCAGACACAAAGGTAGCCGTTGTTTTTGGAGTAATAGCAGCGAAGCGATACGGAACAGACCTGACCCTAGAGAAGGGGCTACAAGGCCGAGGGGACCCTTACAAGACCCTTTTAAGGGAAGCCATAACCGCGCTTCTTAATTCCTATAATTCCCTTCATTTCCCCTACCCTCCACTCTCTGTTGTCAAACACTTTAACTGGGCCTTATTGAGCTCTCGACGCTCCGTCCTCCTCACTGCCCTTCACTTCAAACACGCCAACTCCGGCGGCAACAGCCACGTCACCTGTAAATTCGAGCGTTGCAAGTGA 987 50.56 MDLLFKFKLSFLVASLLSATTAYGAALISGTVFCDQCKDGQISFFDFDLPVNGVKVTLACGDGKGGFFNVRDDVTNFLGSFLMKVDGTPDLRGCTATVSGAAPGARTNCTVAGGPPRSLKLVFRLLNLEMYSLGGPLLSQPVQPKPFCSRHVPVPGPKPPSPPSLPPLPKLPPLPPLPQLPPLPPLPSFPPPMRQMPHMPFLEASSACQHENWTNPDYKCYWRAVNPDTKVAVVFGVIAAKRYGTDLTLEKGLQGRGDPYKTLLREAITALLNSYNSLHFPYPPLSVVKHFNWALLSSRRSVLLTALHFKHANSGGNSHVTCKFERCK* 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2616800 2617955 - Chy11G188670.1 Chy11g00287 236048

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00287 328 Pfam Pollen protein Ole e 1 like 28 111 - -
Chy11g00287 328 PANTHER OS05G0346700 PROTEIN 9 325 - -
Chy11g00287 328 PANTHER PROTODERMAL FACTOR 1 9 325 IPR039923 -
Chy11g00287 328 MobiDBLite consensus disorder prediction 149 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00287 - - - mcha:111015504 342.813
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g01506 Chy-Chr1:20743451 Chy11g00287 Chy-Chr11:2616800 2.15E-10 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g121 . . . . . . . . . . . Cma20g00765 . Car20g00669 . . . . . . . . . . . . . . . . . . Cone8ag1269 . . . . Chy11g00287 . . . . . . . . . Sed01g0216 . Cmo20g00762 . . . . Cpe16g00302 . Bhi10g01882 Tan05g1180 Cmetu11g1766 . Hepe08g0268 . . Cla02g01139 Cam02g1215 Cec02g1223 Cco02g1267 Clacu02g1197 Cmu02g1166 Cre02g1473 . Csa02g01362 . Cme11g00410
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013841 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00287 Chy_Chr11 FPKM 3.720715 4.731559 8.567235 9.169193 5.120068 4.271494 5.277054 2.191513 2.091517 2.480571