Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00295 ATGGATCAACTAATTCAACGCGACGGTCTCCTTCAGAATCCGCCCACACCCTCCTCCTCCTCCTCCATTGTCCCATGCGTTGAACTTCCCGGCCACCCAATTCGTTCTCAATCCAGTTCCAGGTCTGAAGGGGAATTCAAGGATTCTGCAGCTGCTAGAAGAGTTCAGAAGGCTGACAGAGAGAAATTAAGAAGGGGTCGTTTGAATGAGCAATTTGTCGAGCTGGGAAATATTTTAGATCCTGATAGGCCCAAGAATGACAAAGCAACCATTTTAATGGATACCATTCAATTGCTGAAGGATCTGACATCTCAAGTGAACAAATTGAAAGCTGAATATGCTACTTTAACAGAAGAATCACAAGAGCTAGCCCAGGTAAAGAGTGATCTAAGAGAAGAGAAGGCGTTGCTTAAATCTGATATTGCGAATCTTAATACTCAGTATCAGCAGAAACTCAGGGCTACGTATCCTTGGGCTTCCATGGATCACTCAGTTGTCATGGCCCCTGCCCCCTTTCCATTTCCCATGCCGATGCAAATGCCTCCAGGGCCGTATCCTCTGCATCCATCCTTGCGGCCTTATACGTTCTTTGGTAATCCAGATCCCAGGGTGATTGCAAACCCTTGTTCAACCTTCGTCCCATACATACCTCCTAATTCCTTGACCGAGCAGCAGTCCTCCCAAAATGCACCACCTTTCATTCAGTCAGACAATCGGTCTCGTAACTTGAGTGAGCAAAATACCGGGAGCAAGTCCTCAATTGAAAGCAAGACTGAGAAAAGTGTAGATTCTAATGAAGTTGCAACTTGCCTGGAGTTGAAAACTCCGGGATCTTCCACAGATCGGGATACATCGTACGAACAAACAAACGAAAAAAACAGAAAGGAAGGCAATCTATCAGTAGGGAGTTCTTCAAGTAGATGTTCTTCACCTCGTAGTTTAGAGGCCAACTCATCTAGTAGCATGCCAAATGGACGAAAATCAACTGATATATGTGGAAGCCCATAA 1008 45.24 MDQLIQRDGLLQNPPTPSSSSSIVPCVELPGHPIRSQSSSRSEGEFKDSAAARRVQKADREKLRRGRLNEQFVELGNILDPDRPKNDKATILMDTIQLLKDLTSQVNKLKAEYATLTEESQELAQVKSDLREEKALLKSDIANLNTQYQQKLRATYPWASMDHSVVMAPAPFPFPMPMQMPPGPYPLHPSLRPYTFFGNPDPRVIANPCSTFVPYIPPNSLTEQQSSQNAPPFIQSDNRSRNLSEQNTGSKSSIESKTEKSVDSNEVATCLELKTPGSSTDRDTSYEQTNEKNRKEGNLSVGSSSSRCSSPRSLEANSSSSMPNGRKSTDICGSP* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2718166 2720680 + Chy11G188750.1 Chy11g00295 236056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00295 335 MobiDBLite consensus disorder prediction 46 61 - -
Chy11g00295 335 MobiDBLite consensus disorder prediction 217 255 - -
Chy11g00295 335 CDD bHLH_AtILR3_like 57 131 - -
Chy11g00295 335 Pfam Helix-loop-helix DNA-binding domain 53 102 IPR011598 GO:0046983
Chy11g00295 335 Coils Coil 92 147 - -
Chy11g00295 335 SMART finulus 58 108 IPR011598 GO:0046983
Chy11g00295 335 MobiDBLite consensus disorder prediction 217 335 - -
Chy11g00295 335 Gene3D - 50 130 IPR036638 GO:0046983
Chy11g00295 335 PANTHER TRANSCRIPTION FACTOR BHLH121 35 328 IPR044579 GO:0003700|GO:0055072
Chy11g00295 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 102 IPR011598 GO:0046983
Chy11g00295 335 PANTHER TRANSCRIPTION FACTOR BHLH121 35 328 - -
Chy11g00295 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 122 IPR036638 GO:0046983
Chy11g00295 335 MobiDBLite consensus disorder prediction 9 25 - -
Chy11g00295 335 MobiDBLite consensus disorder prediction 295 335 - -
Chy11g00295 335 MobiDBLite consensus disorder prediction 1 61 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00295 - - - csv:101213608 586.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02506 Chy-Chr2:28496600 Chy11g00295 Chy-Chr11:2718166 2.06E-17 dispersed
Chy11g00295 Chy-Chr11:2718166 Chy11g00586 Chy-Chr11:6690012 1.34E-13 dispersed
Chy11g00295 Chy-Chr11:2718166 Chy02g00573 Chy-Chr2:3449042 7.14E-84 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g111 . . Bda06g00968 . Bpe07g00490 . Bma05g00413 . . . Cma02g00329 . . . . . . . . . . . . . . . . . . . . Cone12ag1212 Cone8ag1264 . . Lsi10g00463 . Chy11g00295 . . . . . . . . . Sed01g0221 . . . . . . . Cpe05g01310 Bhi10g01891 Tan05g1191 Cmetu11g1417 . Hepe08g0945 . . Cla02g01113 Cam02g1185 . . Clacu02g1175 Cmu02g1136 . . Csa02g01354 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001472 1 2 3 3 2 2 2 2 2 2 2 2 3 1 2 3 2 4 3 2 2 2 2 2 2 2 2 6 5 2 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18675 PF00010 HLH 6.20E-08 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00295 Chy_Chr11 FPKM 15.789922 15.238256 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0