Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00302 ATGGAGGTCTTCTTCCCTTCCAACCCTCAATCCCTCACCTTCAATCCATGTCTTCCTCTCAATTCTCCTTCCTCCTTCTCCTACTCTCGCCTCCGCTTCGTCCGCCATCAATTCCTTGGCTCTTCTCACAATCTCCGCCCTCCCGATGCCCTGCGCTCTCGTCGAAGGTGCCGGAACCTTGGCCTCTTTGTTCAATCTCCCAGGTGCATTCTCCGAGCTACCTTCAGTTCCAATCCGGTTCTCATCGTTGTTGCTGTCGTTACTTTCTCTGCTGTCTCGTTCATTTACATGAATTTAAATAAAAGGAAGAAGAATGCGGTTGAGCGTTCCCGATCTCCAAAGCTTGCATTATCTCAACTAGGTAGAGGCATCAACTGGTCTGTTGATGGTCATATAATGGGCTTTAGGGATCACCATGGCGACTTTTTGGAGCAGAACATTGCTGTAAAGGATAGAGCTGAGGAGAAGAGTTATTCTGGGGAAGAAGAGACTGTTCTACAGCTTCAAAAAACCGGCCTGTCACATGAGGCCAGCATCACTGAGACATTGCCGCCTTCTGTTTCTGAGGTTACCACTTCTAAGGATAGTGATTCTCTGTTTTCAGATGAACGTGAAGCAACAGATCCTTCTCTTCTTTCTGCTATATTTGAATCTGGTGTCTTGCAGCCTCTTATTTTCGCCAATGACATGACTGACTTACGACTGAATGGATCTCATGTCAAATCCCACTCTGAATTGCCTGTTGTGGTTGATACAACTGAGCTTCCACCTGTAACTGGTCCTTTATATAGTGTGTATGATCAAGTGACTCAACATTTAAAAGAAGATGGTGAGCTTCTAAAAGAGGAAAAATTCAATAGTTCCAACTTTCAAATTGAAGAACCGGCTAGAGAAGATATTTACATGTTCTATGAAGATACAAAGTCAAGTAATCAAACAGAAACTTCTTCTCGTACTTCTCATCTATACAACCAAAAATTTTCTTCATTGATGGTTAATGGTGTCTCCAGAGTGGCAGAATTAGTGTTAGAGGATTCTCTTCCAGTTGCAGGGTATGTTCAAAGAGAAGTACCTGATGTTAGATATAAGGAAGGTTCTTCAGGAAACAGAAAAAAATCTGGTGGCAACAATATTTCAAGACATGGGGAAAGAAAAGAACCCAGTCTGCATAAAGGAAAAGTTGTGAATGGGTTACCCCATCCAAACGGGAAGCATGTTCATTACAAAAATCTTGACGTAGATCAATATAAATCATATAATCAATGCCTGAAAGGTGGAAGGCTGCACGACTGCATCAGAATACTTCAAGATATGGAAAAAGAAGGGACATTGGATATGAATAAGATTTATCATGGGAAGTTTTTCAATATTTGCAAGAGTAAAAAGGCTGTTCAGGAAGCTTTTCAGTACACCGCACTTATTCAAAACCCCACATTGAGTACATTCAATATGCTCATGTCTGTATGTGCAAGTTCTCAAGATTCTGAAAGAGCTTTCCAAGTTGTGCGGCTTGTCCAGGAGGCTGGAATGAAAGCAGATTGCAAACTGTACACTACTTTAATCTCAACATGTGGCAAAAGTGGAAAAGTGGATGCAATGTTTGAAGTATTCCACCGAATGGTTAATGCTGGTGTGGAACCTAACGTTCACACATATGGGGCACTTATTGATGGTTGTGCAAGAGCAGCTCAAGTTGCAAAGGCATTTGGCGTGTATGGAATAATGAGGTCAAAGAACGTGAAGCCAGACAGAGTTGTATTCAATGCACTTATCACTGCATGTGGTCAGTCAGGCGCAGTGGATCGTGCTTTTGACGTGCTTGCAGAAATGGGGGCCGAGTTACATCCTATAGAGCCGGATCATATTACAATTGGTGCTTTGATGAAGGCATGTGCAAATGCTGGTCAGGTTGATCGAGCAAGAGAAGTGTACAAGATGATCCATGATTATAAGATTAAGGGCACACCAGAGGTTTACACCATTGCTGTTAATTGTTGCAGTCAATCTTGTGATTGGGACTTTGCTTCCAATATATATCAAGATATGACCAGGAAAGGAGTGCAACCTGATGAGATTTTTCTCAGTGCATTAATAGATGTTGCAGGCCATGCTGGTAAGCTGGATGCTGCCTTTGAAGTCTTAGGAGAAGCCAAGACACTAGGGATACGTGTTGGCATTGTGTCATATAGTTCTTTGATGGGTGCCTGTAGCAATGCTAAAAACTGGCAGAAGGCCTTGGCACTGTATGAGGATCTCAAGTCTATGAAATTGAGGCTAACTGTATCAACTGTAAACGCCCTAATAACTGCACTGTCTGATGGGGAACAACTACAAATGGCTATGGATATTCTAACTGAAATGAAGGAATTAGGACTCTCCCCGAACAATATTACATACTCCATACTTACGGCAGCGAGTGAAAGGAATAATGATTTAGAAATTGCCCTGATGCTTCTCTCTCAAGCCAAAGAGGATGGGATTGTGCCAACCTTAACCATGTATAGGTGCATAATTGGCATGTGCTTACGAAGAATTGCAGATCCATCTTCCCTTGATAGACCACTCATGTCACTGGACTCTACACTGCCTCAAGTCGATAGTAAGTGGACAGCACAGGCCTTAAAGGTGTACCGGGAAATAATTGAAGCCGGAATTGTTCCAAGCATTGACGTTTTATCTCAAGTTTTGGGGTGCTTGCAGATTCCTCATGATCCCGCCTTAAAAAGTAGACTCATAGAAAACATAGGAGTAAGTGCTGACTCATCAAGATCTTCAAGTCTCTGCTCCTTGATAGATGGCTTTGGTGAATATGACCCTCGTGTATTTTCACTGTTTGAGGAAGCTGCTTCACTTGGAGTAGCTCCATTTGTATCCTTAAAAGGAAATCCTATTGTTGTAGATGCCAAGGAGTTGCAGATTCATACAGCTGAGGTTTACCTCTTGACAGTTTTGAAAGGTCTCAAACATCGGCTTGCCGCTGGTTCAAGGTTACCGAACATAATGATCTTACTGTCGAATGAGACAATGCAAATGCTCTCTTCGAAGGGGGAGAGAACCATTAATCTTTCGGGAAGGGTTGGACAAGCAGTTGCGGCATTGTTGAGAAGACTTGGGCTTCCTTACCAGGGGAATGAATCAAGTGGAAAAATCAGAATCAATGGTTTGGCCCTGAGAAGATGGTTACAACCGAAACTTTCCGATTCTCTAAGTGGAAAACCAGGAGAGTTCGGCACGTTTCAGTCACGTTTAAGAAAAGGAATAAGCCACCAGCAGCGTAATATTCGCATTGGGAACCTATCTTTGGATTAA 3309 42.67 MEVFFPSNPQSLTFNPCLPLNSPSSFSYSRLRFVRHQFLGSSHNLRPPDALRSRRRCRNLGLFVQSPRCILRATFSSNPVLIVVAVVTFSAVSFIYMNLNKRKKNAVERSRSPKLALSQLGRGINWSVDGHIMGFRDHHGDFLEQNIAVKDRAEEKSYSGEEETVLQLQKTGLSHEASITETLPPSVSEVTTSKDSDSLFSDEREATDPSLLSAIFESGVLQPLIFANDMTDLRLNGSHVKSHSELPVVVDTTELPPVTGPLYSVYDQVTQHLKEDGELLKEEKFNSSNFQIEEPAREDIYMFYEDTKSSNQTETSSRTSHLYNQKFSSLMVNGVSRVAELVLEDSLPVAGYVQREVPDVRYKEGSSGNRKKSGGNNISRHGERKEPSLHKGKVVNGLPHPNGKHVHYKNLDVDQYKSYNQCLKGGRLHDCIRILQDMEKEGTLDMNKIYHGKFFNICKSKKAVQEAFQYTALIQNPTLSTFNMLMSVCASSQDSERAFQVVRLVQEAGMKADCKLYTTLISTCGKSGKVDAMFEVFHRMVNAGVEPNVHTYGALIDGCARAAQVAKAFGVYGIMRSKNVKPDRVVFNALITACGQSGAVDRAFDVLAEMGAELHPIEPDHITIGALMKACANAGQVDRAREVYKMIHDYKIKGTPEVYTIAVNCCSQSCDWDFASNIYQDMTRKGVQPDEIFLSALIDVAGHAGKLDAAFEVLGEAKTLGIRVGIVSYSSLMGACSNAKNWQKALALYEDLKSMKLRLTVSTVNALITALSDGEQLQMAMDILTEMKELGLSPNNITYSILTAASERNNDLEIALMLLSQAKEDGIVPTLTMYRCIIGMCLRRIADPSSLDRPLMSLDSTLPQVDSKWTAQALKVYREIIEAGIVPSIDVLSQVLGCLQIPHDPALKSRLIENIGVSADSSRSSSLCSLIDGFGEYDPRVFSLFEEAASLGVAPFVSLKGNPIVVDAKELQIHTAEVYLLTVLKGLKHRLAAGSRLPNIMILLSNETMQMLSSKGERTINLSGRVGQAVAALLRRLGLPYQGNESSGKIRINGLALRRWLQPKLSDSLSGKPGEFGTFQSRLRKGISHQQRNIRIGNLSLD* 1103
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2759886 2770076 + Chy11G188820.1 Chy11g00302 236063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00302 1102 MobiDBLite consensus disorder prediction 376 391 - -
Chy11g00302 1102 MobiDBLite consensus disorder prediction 182 201 - -
Chy11g00302 1102 Pfam Pentacotripeptide-repeat region of PRORP 480 651 IPR033443 -
Chy11g00302 1102 TIGRFAM PPR: pentatricopeptide repeat domain 658 691 IPR002885 -
Chy11g00302 1102 TIGRFAM PPR: pentatricopeptide repeat domain 516 549 IPR002885 -
Chy11g00302 1102 TIGRFAM PPR: pentatricopeptide repeat domain 550 583 IPR002885 -
Chy11g00302 1102 TIGRFAM PPR: pentatricopeptide repeat domain 763 795 IPR002885 -
Chy11g00302 1102 TIGRFAM PPR: pentatricopeptide repeat domain 727 759 IPR002885 -
Chy11g00302 1102 TIGRFAM PPR: pentatricopeptide repeat domain 623 653 IPR002885 -
Chy11g00302 1102 TIGRFAM PPR: pentatricopeptide repeat domain 481 514 IPR002885 -
Chy11g00302 1102 Gene3D Tetratricopeptide repeat domain 407 593 IPR011990 GO:0005515
Chy11g00302 1102 Gene3D Tetratricopeptide repeat domain 594 705 IPR011990 GO:0005515
Chy11g00302 1102 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MRL1, CHLOROPLASTIC 73 1102 - -
Chy11g00302 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 795 829 IPR002885 -
Chy11g00302 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Chy11g00302 1102 Pfam PPR repeat family 761 802 IPR002885 -
Chy11g00302 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 620 654 IPR002885 -
Chy11g00302 1102 Gene3D Tetratricopeptide repeat domain 706 869 IPR011990 GO:0005515
Chy11g00302 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 725 759 IPR002885 -
Chy11g00302 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Chy11g00302 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 583 613 IPR002885 -
Chy11g00302 1102 MobiDBLite consensus disorder prediction 361 402 - -
Chy11g00302 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 760 794 IPR002885 -
Chy11g00302 1102 Pfam Pentatricopeptide repeat domain 678 738 IPR002885 -
Chy11g00302 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Chy11g00302 1102 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 655 689 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00302 - - - csv:101204147 2113.19
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy08g00416 Chy-Chr8:10047786 Chy11g00302 Chy-Chr11:2759886 5.76E-07 dispersed
Chy11g00302 Chy-Chr11:2759886 Chy01g01766 Chy-Chr1:23322693 1.59E-31 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g85 . . . Bda08g00972 . . Bma05g00408 . . . Cma02g00333 Cma20g00774 Car02g00214 Car20g00677 . . . . . . . . . . . . . . . . . . . . . Lsi10g00458 . Chy11g00302 . . . . . . . . . Sed01g0228 Cmo02g00330 Cmo20g00774 . . . . Cpe16g00291 Cpe05g01307 Bhi10g01901 Tan05g1200 Cmetu11g2217 . Hepe08g0952 . . . . . . . . . . Csa02g01347 . Cme11g00424
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008629 1 2 0 1 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00302 Chy_Chr11 FPKM 269.706818 292.071869 232.028168 229.382004 326.387543 359.365631 315.828766 338.355652 340.81778 339.870087