Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00322 ATGTCTATACGAAGTCTTGATTCCTTCGCCTGTTTCTTCCGCCATTCTTCTCAATTCAAAAATCTCAAAACCATTAAGAAGATTCACGCTCATTTGCTTAGAACCCACTTCCAATTTTTCTCCCCGAATCTTCACTCTAAGCTTATACTATCCTACTCTCAAATCATCCCCAATTTTGATGCGAAAAGCTTAAACAGCATCTTCAAATGCATCATCCCCAGAACTTCTTTAACCTTCAATGTAATGATTTCTGACTTTTCTCGACATGGGTTTCCAGATTTTGCGTTAATGGGGTTCTCTTTCATGCATTCTAATGGGGTTCCTATTGACACGTATGCCCTTTGCAGCTCTTTGAATGGTTGTTCTTTTCTTCAGAATGTGGTGTATGGAAAACAAATTCACGCATTCGTGGGGAAATCAGGTTGGTTGTGTAGTGTTTTTGTCGGGAGTGCGATTGTTAATATGTATGCAAAAAATTCTTTGATTTATGATGCCGTTGAAGTGTTTGATGAAATGCCCATGAAGAATACTGTGTGCGCAAATGCATTGCTGGCTGGGTATGGCGAGGCTAGGATGTGGGTTGAAGGACTTGAATTGCTACGGAAGATGCAGGGTCTGGATTTGAAGTATGACCAGTTCACTCTGTCTGCTTCTTTACGAGCATGCACTGATTTATCTGCAATTGCACTAGGTAAGCAAGTGCATGCTTATATACTGCGAACGGTTTATGATATTACAAGTGATGTTCATTTGCAAAGCACATTAGTTGAAATGTATGGGAAGAATGGGATGGTGGAAAAAGCATGGAGTGTATTCAATTTTTCAGGACTTGGACGCCAAGAAGATGGGAAAAGGGATATTATAATGTGGACTTCTATGCTTAGTGTATATGGTAGAAATGGGTGTTACAAAAGAGTAATTGAACTGTACAACCAGATGTTGATGGAAGGGATCAAACCAGATAGGGTGGCTTTTGTGACAGTCATATCAGCTTGTGGTCATACTGGCCAGGTGAATCTTGGAGTCAAGTATTTTGACTCCATGCAGAGTGATTTTGGGTTGGAACCTGGTCAAGAGCACTACAGTTGTTTGGCTGACTTGCTCTGTAGAGCTGGGGAATTGGAAAAGGCATGGAAGCTGGTAAATGATATCAAAAGTCGGGATTACAATGTTTCCCTGTGGGGAGCTTTACTCCGTGCTTGCTTGGAACAGGGAAATATTAAGTTGGGCAATTTGGCAGCTCGTAGGGCACTTGAATTGGATCCTCAGAATACTGGGATATTTGTTATGCTATCAAATCTATATGCTGGTTTTGGCTTGTGGAATGAGGTAGAGCATTTGAGGGAATTTGTGAGAAAGGAAGGGCTGAATAAAGATGTTGGATATAGCTGGATAGAGATCACATGTTGA 1410 40.99 MSIRSLDSFACFFRHSSQFKNLKTIKKIHAHLLRTHFQFFSPNLHSKLILSYSQIIPNFDAKSLNSIFKCIIPRTSLTFNVMISDFSRHGFPDFALMGFSFMHSNGVPIDTYALCSSLNGCSFLQNVVYGKQIHAFVGKSGWLCSVFVGSAIVNMYAKNSLIYDAVEVFDEMPMKNTVCANALLAGYGEARMWVEGLELLRKMQGLDLKYDQFTLSASLRACTDLSAIALGKQVHAYILRTVYDITSDVHLQSTLVEMYGKNGMVEKAWSVFNFSGLGRQEDGKRDIIMWTSMLSVYGRNGCYKRVIELYNQMLMEGIKPDRVAFVTVISACGHTGQVNLGVKYFDSMQSDFGLEPGQEHYSCLADLLCRAGELEKAWKLVNDIKSRDYNVSLWGALLRACLEQGNIKLGNLAARRALELDPQNTGIFVMLSNLYAGFGLWNEVEHLREFVRKEGLNKDVGYSWIEITC* 470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 2854604 2856013 + Chy11G189020.1 Chy11g00322 236083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00322 469 SUPERFAMILY TPR-like 360 443 IPR011990 GO:0005515
Chy11g00322 469 PANTHER OS02G0126500 PROTEIN 22 464 - -
Chy11g00322 469 Pfam PPR repeat 179 205 IPR002885 -
Chy11g00322 469 Pfam PPR repeat 360 388 IPR002885 -
Chy11g00322 469 Pfam PPR repeat 151 175 IPR002885 -
Chy11g00322 469 Pfam PPR repeat 78 107 IPR002885 -
Chy11g00322 469 Pfam PPR repeat 253 273 IPR002885 -
Chy11g00322 469 Pfam PPR repeat family 286 332 IPR002885 -
Chy11g00322 469 Gene3D Tetratricopeptide repeat domain 75 250 IPR011990 GO:0005515
Chy11g00322 469 Gene3D Tetratricopeptide repeat domain 251 466 IPR011990 GO:0005515
Chy11g00322 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 357 391 IPR002885 -
Chy11g00322 469 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 22 464 - -
Chy11g00322 469 Pfam E motif 406 466 IPR046848 -
Chy11g00322 469 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 286 320 IPR002885 -
Chy11g00322 469 TIGRFAM PPR: pentatricopeptide repeat domain 324 356 IPR002885 -
Chy11g00322 469 TIGRFAM PPR: pentatricopeptide repeat domain 288 321 IPR002885 -
Chy11g00322 469 TIGRFAM PPR: pentatricopeptide repeat domain 361 389 IPR002885 -
Chy11g00322 469 TIGRFAM PPR: pentatricopeptide repeat domain 253 273 IPR002885 -
Chy11g00322 469 TIGRFAM PPR: pentatricopeptide repeat domain 179 211 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00322 - - - cpep:111777029 817.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00322 Chy-Chr11:2854604 Chy04g01740 Chy-Chr4:23777350 7.92E-25 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g68 . . . . . . . . . . . Cma20g00798 . Car20g00683 . . . . . . . . . . . . . . . . . . . . . Lsi10g00430 . Chy11g00322 . . . . . . . . . . . Cmo20g00806 . . . . Cpe16g00285 . Bhi10g01925 . . . . . . . . . . . . . . Csa02g01323 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009137 1 6 1 1 1 1 1 1 1 1 1 0 1 0 0 1 1 0 1 0 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00322 Chy_Chr11 FPKM 6.392283 7.520061 0.460517 0.342809 20.329086 21.199173 22.035311 0.183962 0.128466 0.180919