Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00338 ATGGATGCCATCCGAAAGCAAGCCACTAAGCTCCGTGAACAGGTCGCTCGCCAGCAACAGGCTGTACTCAAACAGTTTGGTGCTGGAGGATATGGAGGTTCAGATAACATTATTACGGATGAGGCGGAGCTTCACCAACACCAAAAACTAGAAAAGTTGTATATATCAACTCGTGCTGGAAAGCACTTTCAAAGGGATATTGTACGAGGAGTAGAGGGATATATTGTAACCGGTTCAAAACAAGTCGAAATAGGAACAAAGTTGTCAGAGGATAGCAGGAAATATGGTGCTGAAAATACATGTACTAGTGGCAGCACGTTATCGAAAGCTGCATTAAATTATGGGCGAGCTCGAGCTCAAATGGAGAAAGAGCGTGGAAACATGCTGAAGGCTCTTGGCACTCAGGTAGCAGAGCCATTGAGAGCAATGGTTATGGGTGCTCCTTTGGAGGATGCTCGACATCTTGCTCAACGATATGATAGAATGCGACAAGAAGCTGAAGCTCAGGCTATTGAGGTTTTCAAGCGCCAGGCAAGAGTTAGGGAAGCATCGGGCAATGCTGAGATTACTGTGAAGTTGGAAGCTGCCGAAGCGAAATTGCATGATCTAAAGTCAAATATGGCAACAATGGGAAAGGAAGCTGCAGCAGCCATGGCTGCTGTTGAAGCTCAACAACAGAGGCTAACTCTCCAACGACTCATTGCCATGGTTGAAGCAGAACGTGCCTATCATCAGAGAGTCCTTCAGATACTTGATCAGCTTGAAGGCGAGATGATATTGGAGCGGCAAAGAATTGAAGCTCCCCCGACTCCTCCTCCTGGTCCAAGTATTGACAATAGCATGCCGCCTCCCCCATCATATGAAGAAGTCAATGGTGTATTTGCTTCTCAAGCACATAATGGCTCAACAGATGCCATGGGTTACTTTTTGGGAGAGGTTATGCATCCGTACCTAGCCGAGTCAGACGTTGAGCTCAATTTATCAGTTGGCGACTACGTTGTTGTCAGAAAGGTGTCGAACAATGGTTGGGCCGAGGGAGAGTGCAAAGGTAAAGCAGGTTGGTTCCCATTTGGATATATTGAAAGAAGAGAACGCGTACTCGCAAGTAAGGTTGCTGAGGTGTTTTGA 1128 46.63 MDAIRKQATKLREQVARQQQAVLKQFGAGGYGGSDNIITDEAELHQHQKLEKLYISTRAGKHFQRDIVRGVEGYIVTGSKQVEIGTKLSEDSRKYGAENTCTSGSTLSKAALNYGRARAQMEKERGNMLKALGTQVAEPLRAMVMGAPLEDARHLAQRYDRMRQEAEAQAIEVFKRQARVREASGNAEITVKLEAAEAKLHDLKSNMATMGKEAAAAMAAVEAQQQRLTLQRLIAMVEAERAYHQRVLQILDQLEGEMILERQRIEAPPTPPPGPSIDNSMPPPPSYEEVNGVFASQAHNGSTDAMGYFLGEVMHPYLAESDVELNLSVGDYVVVRKVSNNGWAEGECKGKAGWFPFGYIERRERVLASKVAEVF* 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3047724 3051465 + Chy11G189180.1 Chy11g00338 236099

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00338 375 PANTHER SH3 DOMAIN-CONTAINING 1 375 - -
Chy11g00338 375 Gene3D Arfaptin homology (AH) domain/BAR domain 44 261 IPR027267 -
Chy11g00338 375 ProSiteProfiles Src homology 3 (SH3) domain profile. 306 365 IPR001452 GO:0005515
Chy11g00338 375 PANTHER PROTEIN, PUTATIVE-RELATED 1 375 - -
Chy11g00338 375 SUPERFAMILY BAR/IMD domain-like 47 258 IPR027267 -
Chy11g00338 375 Coils Coil 1 21 - -
Chy11g00338 375 Pfam Variant SH3 domain 313 361 IPR001452 GO:0005515
Chy11g00338 375 Coils Coil 186 213 - -
Chy11g00338 375 Gene3D SH3 Domains 311 363 - -
Chy11g00338 375 SUPERFAMILY SH3-domain 270 363 IPR036028 GO:0005515
Chy11g00338 375 Coils Coil 220 240 - -
Chy11g00338 375 Coils Coil 149 169 - -
Chy11g00338 375 SMART SH3_2 309 364 IPR001452 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00338 - - - csv:101205534 729.554
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00575 Chy-Chr7:5036436 Chy11g00338 Chy-Chr11:3047724 3.83E-105 dispersed
Chy11g00338 Chy-Chr11:3047724 Chy12g00018 Chy-Chr12:226427 2.13E-131 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g26 . Blo15g00668 Bda06g00963 Bda08g00957 . . Bma05g00428 . . . Cma02g00365 . Car02g00233 . . . . . . . . . . . . . . . . . . . . . Cone10ag1099 Lsi10g00414 . Chy11g00338 . . . . . . Bpe05g00321 . . Sed01g0261 Cmo02g00369 . . . . . . Cpe05g01290 Bhi10g01943 Tan05g1240 Cmetu11g1701 . Hepe08g0977 . . . . . . . . . . Csa02g01306 . Cme11g00167
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007122 2 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00338 Chy_Chr11 FPKM 19.653366 24.194176 8.564457 7.782712 88.714539 86.283577 88.391991 4.243784 3.000291 3.177224