Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00343 ATGAAGATCCGTTGTGATGTTTGCGACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGATGAAGCCGCCCTCTGCGCCGCCTGTGACCGCCAAGTCCACCGTGCAAACAAGCTCGCCAGTAAACACAACCGTTTCTCTCTCCTCCATTCCTCCGCCTCCGCCTCCGCCGCTGCTACTTCAGAGCCGTTGTGCGATATCTGCCAAATCCGGCGAGCGTTCCTGTTCTGTCGGGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATCCCAATTCACGACACGAGCGAACACACCCAGAAGCACAACCGGTTTCTTCTCACCGGCGTGAAGGTCTCCCCGTCGCCGGCGACTTCTTCTTCTTGTTCCTCCTCCGTGGCAAGCGGCGGCGAGGAAAATGAAGGGTCGTTGAAGAAATGCTCGAGGAAGAGGAGTAAAATGGGGTTTAGCAAAGGATTGGTAATTTCAGAGTATTTGGAGAGTTTGCCTGGTTTATAG 495 53.74 MKIRCDVCDKEEASVFCPSDEAALCAACDRQVHRANKLASKHNRFSLLHSSASASAAATSEPLCDICQIRRAFLFCREDRAILCRECDIPIHDTSEHTQKHNRFLLTGVKVSPSPATSSSCSSSVASGGEENEGSLKKCSRKRSKMGFSKGLVISEYLESLPGL* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3109953 3112860 - Chy11G189230.1 Chy11g00343 236104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00343 164 MobiDBLite consensus disorder prediction 111 130 - -
Chy11g00343 164 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Chy11g00343 164 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 163 - -
Chy11g00343 164 SMART bboxneu5 59 106 IPR000315 GO:0008270
Chy11g00343 164 SMART bboxneu5 4 47 IPR000315 GO:0008270
Chy11g00343 164 CDD Bbox1_BBX-like 63 106 - -
Chy11g00343 164 Gene3D Classic Zinc Finger 1 106 - -
Chy11g00343 164 ProSiteProfiles Zinc finger B-box type profile. 59 106 IPR000315 GO:0008270
Chy11g00343 164 CDD Bbox1_BBX-like 5 47 - -
Chy11g00343 164 Pfam B-box zinc finger 61 102 IPR000315 GO:0008270
Chy11g00343 164 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Chy11g00343 164 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 163 - -
Chy11g00343 164 MobiDBLite consensus disorder prediction 111 143 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00299 Chy-Chr1:2124287 Chy11g00343 Chy-Chr11:3109953 2.90E-36 dispersed
Chy11g00343 Chy-Chr11:3109953 Chy11g01928 Chy-Chr11:25396317 7.07E-37 dispersed
Chy01g00751 Chy-Chr1:5569996 Chy11g00343 Chy-Chr11:3109953 1.41E-10 wgd
Chy11g00343 Chy-Chr11:3109953 Chy03g01411 Chy-Chr3:16842241 2.64E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18676 PF00643 zf-B_box 8.00E-07 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00343 - - csv:101207039 294.664