Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00343 ATGAAGATCCGTTGTGATGTTTGCGACAAAGAAGAAGCCTCTGTTTTTTGCCCCTCCGATGAAGCCGCCCTCTGCGCCGCCTGTGACCGCCAAGTCCACCGTGCAAACAAGCTCGCCAGTAAACACAACCGTTTCTCTCTCCTCCATTCCTCCGCCTCCGCCTCCGCCGCTGCTACTTCAGAGCCGTTGTGCGATATCTGCCAAATCCGGCGAGCGTTCCTGTTCTGTCGGGAAGACAGAGCAATCCTCTGTAGAGAATGCGACATCCCAATTCACGACACGAGCGAACACACCCAGAAGCACAACCGGTTTCTTCTCACCGGCGTGAAGGTCTCCCCGTCGCCGGCGACTTCTTCTTCTTGTTCCTCCTCCGTGGCAAGCGGCGGCGAGGAAAATGAAGGGTCGTTGAAGAAATGCTCGAGGAAGAGGAGTAAAATGGGGTTTAGCAAAGGATTGGTAATTTCAGAGTATTTGGAGAGTTTGCCTGGTTTATAG 495 53.74 MKIRCDVCDKEEASVFCPSDEAALCAACDRQVHRANKLASKHNRFSLLHSSASASAAATSEPLCDICQIRRAFLFCREDRAILCRECDIPIHDTSEHTQKHNRFLLTGVKVSPSPATSSSCSSSVASGGEENEGSLKKCSRKRSKMGFSKGLVISEYLESLPGL* 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3109953 3112860 - Chy11G189230.1 Chy11g00343 236104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00343 164 MobiDBLite consensus disorder prediction 111 130 - -
Chy11g00343 164 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Chy11g00343 164 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 163 - -
Chy11g00343 164 SMART bboxneu5 59 106 IPR000315 GO:0008270
Chy11g00343 164 SMART bboxneu5 4 47 IPR000315 GO:0008270
Chy11g00343 164 CDD Bbox1_BBX-like 63 106 - -
Chy11g00343 164 Gene3D Classic Zinc Finger 1 106 - -
Chy11g00343 164 ProSiteProfiles Zinc finger B-box type profile. 59 106 IPR000315 GO:0008270
Chy11g00343 164 CDD Bbox1_BBX-like 5 47 - -
Chy11g00343 164 Pfam B-box zinc finger 61 102 IPR000315 GO:0008270
Chy11g00343 164 Pfam B-box zinc finger 3 44 IPR000315 GO:0008270
Chy11g00343 164 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 163 - -
Chy11g00343 164 MobiDBLite consensus disorder prediction 111 143 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00343 - - - csv:101207039 294.664
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00299 Chy-Chr1:2124287 Chy11g00343 Chy-Chr11:3109953 2.90E-36 dispersed
Chy11g00343 Chy-Chr11:3109953 Chy11g01928 Chy-Chr11:25396317 7.07E-37 dispersed
Chy01g00751 Chy-Chr1:5569996 Chy11g00343 Chy-Chr11:3109953 1.41E-10 wgd
Chy11g00343 Chy-Chr11:3109953 Chy03g01411 Chy-Chr3:16842241 2.64E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g18 . . Bda06g00954 Bda08g00955 . . . Bma12g00543 . . . Cma20g00817 . Car20g00702 . Cpe04g00107 Cpe15g00559 . . . . . . . Cla02g00492 Cam02g0502 Cec02g0502 Cco02g0508 Clacu02g0505 Cmu02g0501 Cre02g0833 . . Cone3ag1218 Cone10ag1103 Lsi10g00408 Csa07g00027 Chy11g00343 Cme01g01353 Blo04g00532 . . Bda14g00574 Bpe15g00849 Bpe05g00323 . . Sed05g3539 . Cmo20g00825 . Cma19g00687 . . Cpe16g00269 . Bhi10g01956 Tan05g1250 Cmetu11g0516 . Hepe08g0983 . . . . . . . . . . Csa02g01300 . Cme11g00162
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01067 . 6 328 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 2.1e-38 156.8
Chy03g01067 . 1 320 C2C2-CO-like Transcription Factor Family AT5G24930 63.2 4.5e-81 298.5
Chy02g02192 . 20 376 C2C2-CO-like Transcription Factor Family AT5G24930 50.9 5.3e-58 221.9
Chy02g02192 . 1 376 C2C2-CO-like Transcription Factor Family AT5G57660 52.1 1.0e-69 260.8
Chy02g02191 CCT 15 366 C2C2-CO-like Transcription Factor Family AT5G57660 50.6 3.1e-58 222.6
Chy03g01067 . 2 331 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.6e-52 201.8
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 7.1e-90 327.8
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 6.0e-89 324.7
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.1e-87 320.5
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.7e-86 315.5
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.1e-87 320.5
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.7e-86 315.5
Chy11g00343 . 1 124 C2C2-CO-like Transcription Factor Family AT1G75540 65.9 2.4e-41 166.4
Chy07g00978 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.5 1.1e-78 290.4
Chy07g01229 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 60.9 3.4e-55 211.5
Chy02g00591 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.1 2.2e-49 192.2
Chy07g01229 . 1 201 C2C2-CO-like Transcription Factor Family AT4G38960 60.2 2.3e-57 218.8
Chy02g00591 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.0 6.7e-49 190.7
Chy11g00343 . 1 124 C2C2-CO-like Transcription Factor Family AT4G39070 67.7 2.6e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000846 4 5 1 2 4 3 4 3 3 3 3 3 4 3 3 4 3 2 4 3 3 3 3 4 3 3 2 3 2 0 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18676 PF00643 zf-B_box 8.00E-07 No_clan Chy TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00343 Chy_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0