Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00350 ATGGCAACTTACTTCTCTAGTTCGAATAACGAAAGGGACACTACTCCCATCCTCTATTCAAGGGGATCTTTGCTCGGTTCGTATGAAGAAACAACAATTCTTCCACGAAATATGATGATGCATGTAAATTCTGGGACATACATGGATTCGTTGCCATCGCAGGCACAAAATGGTTGTGGTCAGATCACGTCGGTTGGAGCAGCAGGAACTACCCAACAGCAGCAAGAGTTTTTATCAAATCTTGGTGGCTCACAAATTGCTGAGCATGATTTTAATACATGGAGAGAAAACCGTAGTGAAATGCTTGGCGCAAACTCGATGCGTGGCCCTACCAATGTTCTTCATGGTGGGCAGAATTTGCAGGGTCAGGGGTTATCCCTTACTCTCAGTACACAAATCCCATCTGCAATCCAAATCCCTTCAATCCCCTACAGAAATTCAGATATGGGTTTAACTTCATTCCTGAGTCCTAATCCGACTAATTCAGGTGAGGATGGCTGCAGAAATGGTGCTTCTAGAGACGAACAGTTGAGAAATGGAGAAAACTTGCCACCTAATTTTCAAGAATTGGCTAAGGGTGAAATATCTCAATACAGCATGTCTACTATTGCAAGAACTATGCCCAACTCAAAGTACCTCAAGGCAGCTCAACAACTGCTTGATGAGGTTGTTAATGTCAGGAAAGCTTTGAAGCGGCCTAATAATGATAGAAACCAGAGTTCACATGAGCATGAAACTAGAAGTGCAAAGAACGGTGACACAGGAACCAAAAATGACAGTTCGATGCTCACTGCAAGTGGAACATCTTCAAACCCTCAAGAAACTGGGAGCAATTCAACGTGTGAGCTCTCCCATGCCGAAAAGCAAGATTTGCAGAACAAGTTGACTAAGCTCTTATACATGCTGGATGAGGTTGATAGAAGGTACAATCAGTACTATCATCAGATGCAGATTGTGGTGTCATCCTTTGATGTGATAGCTGGATGTGGGGCATCTAAGCCATATACTGCACTTGCACTCCAGACCATATCCCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGTCAAGTCAGAACTACCCGTAAAAGCCTGGGAGAGCATGAGAATTCTGGAAGTGACAAGGGAGTTGGAATCACTCGTCTCCGATATGTGGACCAGCAGTTAAGGCAACAGAGGGCACTTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCAATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTGCATCCGTATCCAAAGGATTCTGATAAGATCATGCTGGCAAGGCAGACAGGCTTGACTAGAAGTCAGGTTTCTAATTGGTTTATCAATGCACGTGTACGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAAATAGGCAGCGTAGACATGGACTCTATATCATCATCTGAAAATGCTGGGAAGGCAACAAAAGGAGATAACAAGACCTTTGACGATGATAAAGAGGAGGATCTACAACAAAGTGCAAGTTCAACAGCCACCGAAAGATGTAGCGCTGGAGATATTATCGACTTAAAATCTGATCAAGTCTCTAATCTTGGAAATTCATGTTCCAACAGAGTAGCTAGTTTCCAAAATGGAGCTCACATTGAAGCTCGAAACGAGCTGGCAAAGCCAAACGATGAGTTAAGGCCTAATGTAAATAACTCTAGTTTCTTTCCTGATGCAATTGTCCACTCTCAGGGTGAGAGTGACAGATTTATGGCTGCTGCCGCCGCCTATCACATGTCTGAATTGGGAAGATTCGGGACGGTTGGCGGGGTGTCGCTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGCCTACCATTGCCTGCTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGACGATATGTACAATGCCGCAGCATCTTCCCTCGGGGAAACAGTGCATTTTGAATGCGTAAATAGTGGGAATCCGCAACCGAGGTTTGGCCCTTCCCATCTTTATCATGATTTTGTTGTGTAA 2046 45.06 MATYFSSSNNERDTTPILYSRGSLLGSYEETTILPRNMMMHVNSGTYMDSLPSQAQNGCGQITSVGAAGTTQQQQEFLSNLGGSQIAEHDFNTWRENRSEMLGANSMRGPTNVLHGGQNLQGQGLSLTLSTQIPSAIQIPSIPYRNSDMGLTSFLSPNPTNSGEDGCRNGASRDEQLRNGENLPPNFQELAKGEISQYSMSTIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNDRNQSSHEHETRSAKNGDTGTKNDSSMLTASGTSSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRTTRKSLGEHENSGSDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSVDMDSISSSENAGKATKGDNKTFDDDKEEDLQQSASSTATERCSAGDIIDLKSDQVSNLGNSCSNRVASFQNGAHIEARNELAKPNDELRPNVNNSSFFPDAIVHSQGESDRFMAAAAAYHMSELGRFGTVGGVSLTLGLQHCEGGGLPLPAGTHHGFAAMRGDDMYNAAASSLGETVHFECVNSGNPQPRFGPSHLYHDFVV* 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3195879 3198855 + Chy11G189300.1 Chy11g00350 236111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00350 681 MobiDBLite consensus disorder prediction 150 167 - -
Chy11g00350 681 ProSiteProfiles 'Homeobox' domain profile. 403 466 IPR001356 GO:0003677
Chy11g00350 681 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 68 629 - -
Chy11g00350 681 MobiDBLite consensus disorder prediction 483 517 - -
Chy11g00350 681 MobiDBLite consensus disorder prediction 231 285 - -
Chy11g00350 681 Gene3D - 401 479 - -
Chy11g00350 681 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 68 629 - -
Chy11g00350 681 SMART HOX_1 406 470 IPR001356 GO:0003677
Chy11g00350 681 SUPERFAMILY Homeodomain-like 407 474 IPR009057 -
Chy11g00350 681 MobiDBLite consensus disorder prediction 495 510 - -
Chy11g00350 681 CDD homeodomain 406 467 IPR001356 GO:0003677
Chy11g00350 681 SMART prehox3 201 356 IPR006563 -
Chy11g00350 681 MobiDBLite consensus disorder prediction 231 252 - -
Chy11g00350 681 MobiDBLite consensus disorder prediction 253 285 - -
Chy11g00350 681 MobiDBLite consensus disorder prediction 150 186 - -
Chy11g00350 681 Pfam Associated with HOX 208 355 IPR006563 -
Chy11g00350 681 Pfam Homeobox KN domain 423 462 IPR008422 GO:0003677|GO:0006355
Chy11g00350 681 Coils Coil 288 308 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g02003 Chy-Chr1:24997152 Chy11g00350 Chy-Chr11:3195879 7.86E-103 dispersed
Chy05g00203 Chy-Chr5:1699963 Chy11g00350 Chy-Chr11:3195879 1.66E-92 dispersed
Chy09g01251 Chy-Chr9:14557463 Chy11g00350 Chy-Chr11:3195879 6.02E-73 dispersed
Chy11g00350 Chy-Chr11:3195879 Chy12g00801 Chy-Chr12:12810356 3.69E-72 dispersed
Chy11g00350 Chy-Chr11:3195879 Chy04g01857 Chy-Chr4:24758171 7.35E-105 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18677 PF07526 POX 3.20E-51 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00350 - - csv:101205137 1324.69