Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00353 ATGTCCTCCAATTCCCAGTTCTCTAATGATGTCCACACTGCCATTGATATGGGTTTTGATGCTCATGACCTTGATCGCTTCGCCGAGGTTGCCAGCTGGGCTGCGGATGCTGCTGGGGAAGTCATTCGGAAGTACTTTCGCAAGAAGTTTGAGATCATTGATAAGCCGGATTTCAGTCCTGTGACTGTGGCTGATCAAGCAGCAGAGGAGTCTATGGTTTCAGTTATATTGGAGAACTTTCCTTCTCATGCTATTTATGGTGAGGAAAAGGGATGGAGATGCAAAGAGAATTCAGCTGATTACGTTTGGGTTTTAGATCCCATCGATGGCACAAAAAGTTTTATTACTGGAAAGCCCCTGTTTGGCACTCTCGTTGCATTGTTATATAGAGGGAAACCAATTTTGGGCATCATTGATCAGCCTGTTCTGAGAGAAAGATGGATAGGATTGAATGGGAGGAAAACTACATTGAACGGGCAAAATGTATCTACCAGAACTTGTTCAGACATATCACAGTCCTATTTATATACTACAAGCCCTCACCTTTTCAGTGGAGAAGCAGTTGAGGCATTTGCTCGTGTGAGGGACAAGGTAAAAGTTCCGCTCTATGGTTGTGACTGCTACGCGTATGCCCTTTTAGCATCTGGTTTTGTAGATCTTGTGGTTGAATCTGGTCTCAAGCCGTACGATTTCCTTTCTCTAATACCCATAATCAAAGGGGCTGGTGGTGAAATAACCGATTGGAAAGGAGATGAGCTTTATTGGGAGGCCTCACCTAATTCCCAAGCAACAAGTTTTAATGTTTTAGCAGCTGGGGATAAAGATATACATAAACAAGCCCTTGAATCATTAAGATGGGTCTGA 864 43.52 MSSNSQFSNDVHTAIDMGFDAHDLDRFAEVASWAADAAGEVIRKYFRKKFEIIDKPDFSPVTVADQAAEESMVSVILENFPSHAIYGEEKGWRCKENSADYVWVLDPIDGTKSFITGKPLFGTLVALLYRGKPILGIIDQPVLRERWIGLNGRKTTLNGQNVSTRTCSDISQSYLYTTSPHLFSGEAVEAFARVRDKVKVPLYGCDCYAYALLASGFVDLVVESGLKPYDFLSLIPIIKGAGGEITDWKGDELYWEASPNSQATSFNVLAAGDKDIHKQALESLRWV* 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3231400 3235833 - Chy11G189330.1 Chy11g00353 236114

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00353 287 PANTHER 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 23 285 - -
Chy11g00353 287 SUPERFAMILY Carbohydrate phosphatase 23 285 - -
Chy11g00353 287 ProSitePatterns Inositol monophosphatase family signature 1. 103 116 IPR020583 -
Chy11g00353 287 CDD Bacterial_IMPase_like_1 27 281 - -
Chy11g00353 287 Gene3D - 163 286 - -
Chy11g00353 287 PANTHER PHOSPHATASE 23 285 - -
Chy11g00353 287 Gene3D - 14 162 - -
Chy11g00353 287 PRINTS Inositol monophosphatase superfamily signature 152 175 IPR000760 GO:0046855
Chy11g00353 287 PRINTS Inositol monophosphatase superfamily signature 226 250 IPR000760 GO:0046855
Chy11g00353 287 PRINTS Inositol monophosphatase superfamily signature 81 97 IPR000760 GO:0046855
Chy11g00353 287 PRINTS Inositol monophosphatase superfamily signature 103 119 IPR000760 GO:0046855
Chy11g00353 287 PRINTS Inositol monophosphatase superfamily signature 59 79 IPR000760 GO:0046855
Chy11g00353 287 Pfam Inositol monophosphatase family 24 257 IPR000760 GO:0046855
Chy11g00353 287 TIGRFAM his_9_HisN: histidinol-phosphatase 29 284 IPR011809 GO:0004401
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00353 K18649 IMPL2; inositol-phosphate phosphatase / L-galactose 1-phosphate phosphatase / histidinol-phosphatase [EC:3.1.3.25 3.1.3.93 3.1.3.15] - csv:101205614 578.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00353 Chy-Chr11:3231400 Chy12g00586 Chy-Chr12:8292695 1.36E-20 dispersed
Chy11g00353 Chy-Chr11:3231400 Chy12g00581 Chy-Chr12:8178461 4.52E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g341 . . . . . . . . . . . Cma20g00827 . Car20g00712 . . . . . . . . . . . . . . . . . Cone12ag1167 Cone8ag1215 . . Lsi10g00398 . Chy11g00353 . Blo04g00524 . . . . . . . Sed01g0282 . Cmo20g00837 . . . . Cpe16g00262 . Bhi10g01970 Tan05g1265 Cmetu11g1211 . Hepe08g0993 . . . . . . . . . . Csa02g01288 . Cme11g00142
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011027 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00353 Chy_Chr11 FPKM 64.917137 57.388416 70.045357 64.112961 63.70385 68.491463 60.050171 59.965012 66.11808 62.487015