Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00360 ATGGTGAAGGAGACTGGTTATTATGATGTATTGGGTGTCAGCTTTGATGCCTCCTCTGCTGAAATTAAAAAAGCTTACTATGTTAAGGCAAGGTTAGTTCATCCAGATAAAAACCAAGGAGATCCAAAAGCTGCGGCAAATTTTCAGGTACTGGGAGAGGCTTATCAGGTATTGAGCGATCCTGAGAAGCGTGATGCGTATGACAAGTATGGGAAGGCAGGAGTACAACAGGATGCCATGGTGGACCCTGCAGCTGTGTTCGGTATGCTTTTTGGAAGCGAGTTCTTTGAAGAGTATGTTGGTCAGCTTGCTTTGGCTGTATTATCATCTTTGGAAATCGAGGAAGATACACCAGACTCAGAGTTGCGCAGGCAAAAAATTCAGGAAAAGATAAGGCTGTTTCAAAAGGAAAGGGAAGATAAACTTGCAAACATTCTGAAAGACCGCCTCCAACCATATGTCGTTGGTCAGGTTGACGAGTTTGTAACATGGGCAAGTTCAGAAGCACGACGACTCTCCTGTGCTGCTTTTGGTGAGACCATGCTGCACACCATTGGATACATATACACAAGGAAAGCTGCAAAGGAACTCGGGAAGGACAGACGTTATATGAATGTACCGTTTTTGGCGGAGTGGGTTCGAGATAAAGGACACCAGATAAAATCACAAGTGATGGCTGCTTCAGGTGCCGTTTCTTTGATTCAATTACAGGAAGAGTTGAAGAGGCTGAATGAAGGAGATAACAGGGACGAGAACCTGGCAAAAGCCATTGAAGAGAAGAAAGACGCTGTTCTTAACTCTCTTTGGCAGATTAACGTGGTCGACATTGAATCTACTCTGTCACGTGTCTGCCAAGTGGTTCTTAGAGACCCCAATGTGTCGAAAGACGTATTGAAGCTACGAGCCAGAGGATTAAGGAAGTTTGGAGCGATCTTCCAAGGTGCCAAATCAGCTTATAGTAGAGAAAACAGCCTGAGGCATGAAAGTGATAAATCAATTGGTGATGCTTCAACTTCATGA 1020 44.31 MVKETGYYDVLGVSFDASSAEIKKAYYVKARLVHPDKNQGDPKAAANFQVLGEAYQVLSDPEKRDAYDKYGKAGVQQDAMVDPAAVFGMLFGSEFFEEYVGQLALAVLSSLEIEEDTPDSELRRQKIQEKIRLFQKEREDKLANILKDRLQPYVVGQVDEFVTWASSEARRLSCAAFGETMLHTIGYIYTRKAAKELGKDRRYMNVPFLAEWVRDKGHQIKSQVMAASGAVSLIQLQEELKRLNEGDNRDENLAKAIEEKKDAVLNSLWQINVVDIESTLSRVCQVVLRDPNVSKDVLKLRARGLRKFGAIFQGAKSAYSRENSLRHESDKSIGDASTS* 340
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3289153 3291924 - Chy11G189400.1 Chy11g00360 236121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00360 339 Gene3D DnaJ domain 1 86 IPR036869 -
Chy11g00360 339 Pfam X-domain of DnaJ-containing 135 322 IPR026894 -
Chy11g00360 339 Coils Coil 124 144 - -
Chy11g00360 339 SMART dnaj_3 5 63 IPR001623 -
Chy11g00360 339 CDD DnaJ 7 60 IPR001623 -
Chy11g00360 339 Pfam DnaJ domain 7 68 IPR001623 -
Chy11g00360 339 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Chy11g00360 339 PANTHER BNAA01G05380D PROTEIN 1 330 - -
Chy11g00360 339 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 330 - -
Chy11g00360 339 PRINTS DnaJ domain signature 26 41 IPR001623 -
Chy11g00360 339 PRINTS DnaJ domain signature 43 63 IPR001623 -
Chy11g00360 339 PRINTS DnaJ domain signature 8 26 IPR001623 -
Chy11g00360 339 PRINTS DnaJ domain signature 63 82 IPR001623 -
Chy11g00360 339 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Chy11g00360 339 SUPERFAMILY Chaperone J-domain 2 101 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00360 - - - csv:101206559 655.981
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00444 Chy-Chr7:3402014 Chy11g00360 Chy-Chr11:3289153 1.04E-133 dispersed
Chy11g00360 Chy-Chr11:3289153 Chy07g00914 Chy-Chr7:12955368 4.36E-15 dispersed
Chy11g00360 Chy-Chr11:3289153 Chy03g01336 Chy-Chr3:16323090 3.69E-13 transposed
Chy11g00360 Chy-Chr11:3289153 Chy01g00472 Chy-Chr1:3420535 3.33E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g346 Blo02g00811 . . Bda08g00944 . . Bma05g00437 . . . Cma02g00379 Cma20g00831 Car02g00246 Car20g00716 . . . . . . . . . . . . . . . . . . Cone8ag1214 . . Lsi10g00394 . Chy11g00360 . . . . . . . . . . Cmo02g00386 Cmo20g00840 . . . . Cpe16g00258 Cpe05g01276 Bhi10g01979 Tan05g1273 . . Hepe08g0997 . . . . . . . . . . Csa02g01283 . Cme11g00137
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004762 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 7 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00360 Chy_Chr11 FPKM 13.134875 15.988208 18.22497 17.384804 19.727743 20.537357 20.364086 19.154312 18.61521 17.45719