Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00365 ATGGCAAGGGAATATGAGTTAATAATTAAGATGAATATATTAGGTAATATGTTCAGTTCTTTTGAATCAAAAGATAGATCAATTGGAAAAGTTCTACCACACTTCTGTGGAAGTTGGGTGTGTGGGGGAAAATCATTGAAGTCACCACTATCTAGGTTTGGTCAAGCTTTTAGTTCTAATATGGCCGCTGATCCTTTGACAAGTTCTAATGGCATTGCTAATGTCAATTCACCACCTGATCCACGAAGGACATATCAAGTTGTTGTAGCTGCTACTGAAAATTTGGGTATCAGTAAGGGTGGGAAATTACCATGGAGGTTGCCTTCTGATGTCAAGTTTTTTAATAACATAACCATAACAACATCAGATCCTGGGAAAAGGAATGCAGTTCTAATGGGTCGTAAAACATGGGAGAGTCTTCCTGCTGAGTATCGACCACTACCTGGTCGCTTGAATGTTGTTCTGACTCGTTCTGGAAGTTTTGACATTGCGACTGTTGAAAATGTTATAATATGCGGTAGTGTAATGTCTGCTTTGGAATTATTAGCAGCTTCTCCTTACTGTTTGTCAATAGAGAAAGTGTTTGTTATAGGCGGTGGTGAAATATTAAGGGAAGCTATGAATGCCCCTGAATGTGATGCTGTCCACATTACTGAAATTGAGACAAATATTGAATGTGACACCTTCATACCAGCTATTGATAAGTCGATGTTTCAACCATGGTACTCATCTTTTCCTGTGGTTGAAAACAACTTGCGATATTCATTTAATAGTTATGTTCGTTTGAGGAGCTCAGCTGAACCCCCCATTGACCAGAACAATGGTTTGGTCTCCCATAACAAGCCTGATTTTTCTAACTTTGAAGCTAAGTTTTCTTTCCTACCTAAGAAGATTTTTGAAAGGCATGAGGAGTACTTGTACCTAAAACTTGTTCAAGAAATCATCTCAGATGGTATTACTAAGGATGATAGAACTGGAACAGGTACTTTGTCAAAATTTGGTTGCCAGATGCGGTACAACTTGCGCAAAACTTTTCCACTGCTTACAACTAAGAAAGTATTTTGGCGAGGGGTGGTTGAAGAACTTCTTTGGTTCATTAGTGGTTCAACCAATGCAAAGGTTCTTCAGGAGAAAGGCATTCATATATGGGATGGCAACGCATCCAGAGATTACCTCGATAGTATTGGTCTAAGAGAAAGGGAGGAAGGCGACTTGGGACCTGTATATGGATTCCAGTGGCGACACTTTGGTGCTAGGTATACGGACATGCATGCTGACTATACTGGTCAAGGATTTGATCAGTTGCTAGATGTTATTAACAAGATAAAAAATAATCCTGATGACCGGAGGATCATTCTTTCTGCATGGAATCCATCTGATCTCAAACTGATGGCACTTCCTCCTTGCCACATGTTCTCTCAGTTTTACGTTGCAAATGGGGAATTATCATGTCAAATGTATCAGCGTTCTGCTGACATGGGCCTTGGTGTTCCATTTAATATTGCATCATACGCTCTTCTGACTTGCATGATTGCTCATGTTTGTGGTCTTGCTCGAGGCGACTTCATTCATGTGATTGGAGATGCTCATGTTTACCGTACTCATGTGAGGCCATTGCAGGAACAACTTCAGAAACTTCCCAAACCATTCCCCATTTTGAAGATAAATCCCGAGAAGAAGGATATTGATTCTTTTGTGGCAGATGATTTTGAACTAACTGGTTATGACCCTCATGTGAAGATAGCAATGAAAATGGCAGTATAG 1764 40.02 MAREYELIIKMNILGNMFSSFESKDRSIGKVLPHFCGSWVCGGKSLKSPLSRFGQAFSSNMAADPLTSSNGIANVNSPPDPRRTYQVVVAATENLGISKGGKLPWRLPSDVKFFNNITITTSDPGKRNAVLMGRKTWESLPAEYRPLPGRLNVVLTRSGSFDIATVENVIICGSVMSALELLAASPYCLSIEKVFVIGGGEILREAMNAPECDAVHITEIETNIECDTFIPAIDKSMFQPWYSSFPVVENNLRYSFNSYVRLRSSAEPPIDQNNGLVSHNKPDFSNFEAKFSFLPKKIFERHEEYLYLKLVQEIISDGITKDDRTGTGTLSKFGCQMRYNLRKTFPLLTTKKVFWRGVVEELLWFISGSTNAKVLQEKGIHIWDGNASRDYLDSIGLREREEGDLGPVYGFQWRHFGARYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIILSAWNPSDLKLMALPPCHMFSQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGLARGDFIHVIGDAHVYRTHVRPLQEQLQKLPKPFPILKINPEKKDIDSFVADDFELTGYDPHVKIAMKMAV* 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3362419 3367773 + Chy11G189450.1 Chy11g00365 236126

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00365 587 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 289 587 IPR036926 -
Chy11g00365 587 Hamap Thymidylate synthase [thyA]. 304 587 IPR000398 GO:0004799|GO:0006231
Chy11g00365 587 PANTHER THYMIDYLATE SYNTHASE 1 62 587 IPR045097 GO:0016741
Chy11g00365 587 Gene3D Dihydrofolate Reductase, subunit A 69 263 IPR024072 -
Chy11g00365 587 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 84 261 IPR001796 GO:0004146|GO:0046654
Chy11g00365 587 CDD TS_Pyrimidine_HMase 307 540 IPR023451 -
Chy11g00365 587 ProSitePatterns Thymidylate synthase active site. 449 477 IPR020940 GO:0004799|GO:0006231
Chy11g00365 587 PIRSF DHFR-TS 68 587 IPR012262 GO:0004146|GO:0004799|GO:0006730
Chy11g00365 587 PANTHER BIFUNCTIONAL DIHYDROFOLATE REDUCTASE-THYMIDYLATE SYNTHASE 62 587 - -
Chy11g00365 587 SUPERFAMILY Dihydrofolate reductase-like 82 261 IPR024072 -
Chy11g00365 587 CDD DHFR 88 260 IPR001796 GO:0004146|GO:0046654
Chy11g00365 587 Pfam Thymidylate synthase 307 587 IPR023451 -
Chy11g00365 587 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 295 587 IPR036926 -
Chy11g00365 587 TIGRFAM thym_sym: thymidylate synthase 307 587 IPR000398 GO:0004799|GO:0006231
Chy11g00365 587 Pfam Dihydrofolate reductase 86 261 IPR001796 GO:0004146|GO:0046654
Chy11g00365 587 PRINTS Thymidylate synthase family signature 482 508 IPR000398 GO:0004799|GO:0006231
Chy11g00365 587 PRINTS Thymidylate synthase family signature 438 457 IPR000398 GO:0004799|GO:0006231
Chy11g00365 587 PRINTS Thymidylate synthase family signature 464 479 IPR000398 GO:0004799|GO:0006231
Chy11g00365 587 PRINTS Thymidylate synthase family signature 520 537 IPR000398 GO:0004799|GO:0006231
Chy11g00365 587 PRINTS Thymidylate synthase family signature 345 366 IPR000398 GO:0004799|GO:0006231
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00365 K13998 DHFR-TS; dihydrofolate reductase / thymidylate synthase [EC:1.5.1.3 2.1.1.45] - csv:101208660 1059.67
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g353 Blo02g00809 Blo15g00707 . . Bpe07g00421 . . Bma12g00503 . . Cma02g00385 Cma20g00837 Car02g00250 Car20g00724 . . . . . . . . . . . . . . . . . Cone12ag1160 Cone8ag1209 Cone3ag1173 Cone10ag0979 Lsi10g00386 . Chy11g00365 . . . . . . . . . Sed01g0291 Cmo02g00391 Cmo20g00846 . . . . Cpe16g00253 Cpe05g01272 Bhi10g01985 Tan05g1284 Cmetu11g0118 . . . . . . . . . . . . Csa02g01278 . Cme11g00132
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004370 2 2 3 2 2 1 1 1 1 1 1 1 2 1 1 1 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00365 Chy_Chr11 FPKM 11.220183 14.77662 11.681203 9.877423 9.528233 8.137957 12.734018 3.402567 4.923607 7.134964