Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00369 ATGGCTGAATCAAATCAAACGCAATGCATCGCTATGGATTCCGCCACCGCGTTACAACAGTATCTTGATCACATCCCCGTCCGTTCCATCTCCGGCATCAAGTCCTCCGTCGTTTTGGAAGTCAAGACTGGGGACTTCGTTAAGGATGCAATACGAATAATGTTTCAGAAGAATGTGGCTTCTGCTCTCATCGCCGATGTCTCCACCGACGGTTTCCCTGATCGGTTTATTGGCTTTGTTCATCTCTCAAGCTTGCTTCTTTGGTGTATTCAGGAGATCCGAAAATTGGAGAATGAAATTGAGTGTATTGAGTCTGAGGACACTAAAGAAACTGTTTGTGGGATCCTGGGGTTTCTTGAACAGAATCCACACATTGGCCAAACCAAGGTGGGTGAGTTGGGAAAGACATTCTTGTGGGATCCTTATTTTCCTGTTGGGATGAGGGATACACTTCTCCATGTTCTTCTTATGCTTTCAAAGCATCGGTTACAAGCTGTTCCTGTAGTTGAGCTTTCCAATTCTCACGTTATTGGTTTCATTACACAGAGTGCAGTAATTCATTTGCTTCTGGAATCAAGTGGATTGGAGTGGTTCGATGGCATCGCGGACAAAGTTATATCAGACTTTCGGTTTGATAATGAAGAGCATGTTCTCCATGTCTATGGTGACCAAAACATTATAGAAGCTTTTCATATACTATGGAATAAACAAATTGGTGCAGTTGCTGTAACGGATAGAGGAAGTAAGACGCTTATTGGTTGTTTGAGGAAGAGTGACGCATATCTTCTCTTGGAGAAGGAAGATTTATTTCAGAACAGAAAAAGGATAACCGTGAAGGAGTTCATTCATATGGAACCAAATAAAGGACGAGTGGACGCTAAAATAACAGTCGAAGGGAGCCAAGGGGCACTTACCTTGTCCGATGCCCGTTCTCTAATTAATGGCAAACTTCCAAATATGCACACCCCAGTGACGAACAAGAGAGATGACACACTGAAGCAAGTAATGAAAACTATGGTAGAGACAAATAGCAGTTTCAGCTTTCTTGTCAATAATTTGCAGCAAGCAACGGGGATACTTACTTTGCGAGATATGATAACTCAGTTTGCTCCTCCCTGTATGAATTCAACCATTCAAGGAGGTAGTTTTTTTGAATCTGCTCTGGAACAAACTGGGTGTCAGGTTAGAAATGGTACCATAATTTGTAACAAAACATTTTAG 1221 42.1 MAESNQTQCIAMDSATALQQYLDHIPVRSISGIKSSVVLEVKTGDFVKDAIRIMFQKNVASALIADVSTDGFPDRFIGFVHLSSLLLWCIQEIRKLENEIECIESEDTKETVCGILGFLEQNPHIGQTKVGELGKTFLWDPYFPVGMRDTLLHVLLMLSKHRLQAVPVVELSNSHVIGFITQSAVIHLLLESSGLEWFDGIADKVISDFRFDNEEHVLHVYGDQNIIEAFHILWNKQIGAVAVTDRGSKTLIGCLRKSDAYLLLEKEDLFQNRKRITVKEFIHMEPNKGRVDAKITVEGSQGALTLSDARSLINGKLPNMHTPVTNKRDDTLKQVMKTMVETNSSFSFLVNNLQQATGILTLRDMITQFAPPCMNSTIQGGSFFESALEQTGCQVRNGTIICNKTF* 407
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3402169 3404176 + Chy11G189490.1 Chy11g00369 236130

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00369 406 CDD CBS_pair_SF 140 259 - -
Chy11g00369 406 SUPERFAMILY CBS-domain pair 205 370 IPR046342 -
Chy11g00369 406 Gene3D - 200 370 IPR046342 -
Chy11g00369 406 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 5 404 - -
Chy11g00369 406 Gene3D - 3 193 IPR046342 -
Chy11g00369 406 SMART cbs_1 322 370 IPR000644 -
Chy11g00369 406 SMART cbs_1 37 90 IPR000644 -
Chy11g00369 406 SMART cbs_1 216 265 IPR000644 -
Chy11g00369 406 SMART cbs_1 141 190 IPR000644 -
Chy11g00369 406 PANTHER OS01G0633400 PROTEIN 5 404 - -
Chy11g00369 406 ProSiteProfiles CBS domain profile. 138 195 IPR000644 -
Chy11g00369 406 SUPERFAMILY CBS-domain pair 18 191 IPR046342 -
Chy11g00369 406 ProSiteProfiles CBS domain profile. 319 377 IPR000644 -
Chy11g00369 406 Coils Coil 86 106 - -
Chy11g00369 406 Pfam CBS domain 140 190 IPR000644 -
Chy11g00369 406 CDD CBS_pair_SF 215 366 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00369 - - - csv:101215388 801.586
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00369 Chy-Chr11:3402169 Chy10g00979 Chy-Chr10:15269231 1.10E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g360 . . . . . . . . . . Cma02g00389 . Car02g00252 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00382 . Chy11g00369 . . . . . . . . . . Cmo02g00396 . . . . . . Cpe05g01268 . . . . . . . . . . . . . . . Csa02g01274 . Cme11g00127
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013891 0 0 0 0 0 1 1 1 1 1 1 1 1 1 2 1 1 0 1 0 1 1 1 1 1 1 1 2 1 1 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00369 Chy_Chr11 FPKM 14.812806 18.060308 0.0 0.12319 0.365264 0.325545 0.21986 0.451842 0.176173 0.194573