Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00373 ATGGATAGGTTCGAAGAATATTCGGTGAAACCACCACTTACCGGCGGGGGAGCTCCAAAATCCAAACCGTCAGATTCTTCGTCGTCGCCGGTGGAATCTGCCACACTTCTTCAATTCGACTCGAAAATGGAGGAGAAAAGCAAGATTCTGATAATCGGAGCAACAGGTTATCTAGGGTTCCATTTGGCTCAAGCCAGCTGCAATTCTTCTCACCCTACATTTGCTCTCATCAGAAATTCTACTTTCTCTTCACCTCACAAACTAGACAAGCTCCGAGCTCTCTCCGATGCTGGAGTTAAATTCATTGAGGGTTCTCTGGACGACGAAGCTAGCCTTGTGGAAGCTGTTAATCAAGTGGATGTAGTCATCTGTGCTGTTTCCTCTAAACAGGTGTTGGAACAGAAGCCTCTGATTCGAATCATCAAACAATCTGGTTCCATTAAGAGGTTTATTCCATCAGAATTTGGACTTGATCCTGACAAGGTTCAAATCTTAAACATGGATTATGACTTCTATTCCCGCAAAGCCGAAATTCGTCGGCTAGTTGAAGCTGAAGGCATTCCATATACCATAGTTTCTTGCAATTTTTTTACAAGTTATTTACTTCCTTCCCTTGTTCAACCAGGCATGAAAAGCCCTCCAAGGGATAAGGTGACAATATTTGGTGATGGATATACCAAAGGTGTATTTGTGAAGGTTGATGATGTTGCTGCCTTAACAATTAGTGCAGTGGATGATCCACGCACATTGAACAAGGTAGTTTATCTAAGGCCTGAAGGAAATGTTTATTCCTTGAATGAATTGGTTGAGATTTGGGAGAGTAAAATTGGGAAGAAGCTTGAGAAGAATTATGTATCAGAAGAGGAGCTGCTAAAGATAATTGAAGAGACTCCTTACCCTGAGAACATGGAGTTCATCTTCGTATATTCTGCATTTATAAAGGGGGATCAAATATATTTCGATATCGAGGCATCAAATGGAGTTGATGGTTCAAAATTATATCCACAACTCAAGCACACAACGATTAGTGAGTTCTTGGACACCCTTTTGTAA 1053 41.31 MDRFEEYSVKPPLTGGGAPKSKPSDSSSSPVESATLLQFDSKMEEKSKILIIGATGYLGFHLAQASCNSSHPTFALIRNSTFSSPHKLDKLRALSDAGVKFIEGSLDDEASLVEAVNQVDVVICAVSSKQVLEQKPLIRIIKQSGSIKRFIPSEFGLDPDKVQILNMDYDFYSRKAEIRRLVEAEGIPYTIVSCNFFTSYLLPSLVQPGMKSPPRDKVTIFGDGYTKGVFVKVDDVAALTISAVDDPRTLNKVVYLRPEGNVYSLNELVEIWESKIGKKLEKNYVSEEELLKIIEETPYPENMEFIFVYSAFIKGDQIYFDIEASNGVDGSKLYPQLKHTTISEFLDTLL* 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3451040 3454835 - Chy11G189530.1 Chy11g00373 236134

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00373 350 CDD PCBER_SDR_a 48 345 IPR045312 GO:0016491
Chy11g00373 350 Pfam NmrA-like family 49 280 IPR008030 -
Chy11g00373 350 PANTHER PINORESINOL-LARICIRESINOL REDUCTASE 3-RELATED 44 348 - -
Chy11g00373 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 45 320 IPR036291 -
Chy11g00373 350 Gene3D - 196 345 - -
Chy11g00373 350 MobiDBLite consensus disorder prediction 1 33 - -
Chy11g00373 350 Gene3D - 48 336 - -
Chy11g00373 350 PANTHER PINORESINOL REDUCTASE-RELATED 44 348 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00373 - - - csv:101210047 590.497
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01449 Chy-Chr3:17093729 Chy11g00373 Chy-Chr11:3451040 1.16E-97 dispersed
Chy04g00797 Chy-Chr4:10267495 Chy11g00373 Chy-Chr11:3451040 3.32E-59 dispersed
Chy04g00798 Chy-Chr4:10323931 Chy11g00373 Chy-Chr11:3451040 4.16E-68 dispersed
Chy01g00764 Chy-Chr1:5749305 Chy11g00373 Chy-Chr11:3451040 2.27E-96 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g368 . . . Bda08g00941 Bpe07g00424 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g00373 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000111 5 10 6 7 3 10 5 11 9 7 10 9 5 7 11 5 9 5 6 10 8 9 7 8 12 9 8 7 9 7 234
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00373 Chy_Chr11 FPKM 6.395983 7.270909 2.958451 2.884532 6.792095 5.672193 6.411667 4.042124 3.264011 3.578685