Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00377 ATGACCGCGTCGGCTCGTTTCAAACGACAGAAAACACACCCTGACAGCCTGAGCTTGTCTTCGGTATCGACTCCGGCAAGTCGGGTCGATCATTTCGAAGATTTAGTTGCACCTGGAGGTTGGCTGGCTAAGTACGAGATCTCCTCTAAAGAGCTTCGAACCAATCCGATGTGTTCGTCCCGAGTAAAGGCAGTTAACTCGACGACTGTGGAGGGAGAGATTCCGAAAAAGATCAGAAAAGGAAAGAACAAAGAAACGAAATCGAAAGTAGATAAAGAAAACAATAATAATGTTGAATGGGATGAGAATGGATCAAAAGATGACAGGTTAGAGAAGAAAATGAAAGAAAAGGTTGAAGAAGAAGATGAAGAATCAAAGGTTACTGAGGAAACAAAGAGATGGAAAAAACACAATAATTCAAAAGGTTCAGAAGAAATTAAAAAAATGGATTATGTTCATGTTCGAGCTCGTCGTGGCCAAGCCACTGATAGCCATAGTCTTGCTGAAAGAGCAAGAAGAGAGAAGATAAGTGAAAGAATGAAGTATTTGCAAAATTTGGTGCCTGGGTGTAACAAAATTGCTGGAAAAGCTGGAATGCTTGATGAAATTATTAATTATGTTCAATCTCTCCAACAGCAAGTTGAGTTCTTATCAATGAAAGTGGCTGCTCTAAATCACAGAGTTGATTTCATCAATGTAGATGATCTCTTGGCCAAGCAGATGTTTCCGACTATAACGGACAATTGTTCATCCTACAATAATCAACTTGGAATAATGGGTTCAAGCTCTCTAACAATTCCACAAACTCCATTGATCAACACCAACTTGTCTTCAATTACTCATTTTGAAGTGTCTTCAACGTGGGGAGGTGAATTACAAAGATTTGAAGAAGGTGGAGGGGGGCCGCCATTGTTGTCACCATCAAGCTTTTTATCTAACCAATGTTCTGTCATTGAAGATGAAAATGAAACATTATTTATGGACCACAAACTTCTTCTTCCATTTTAA 1008 39.29 MTASARFKRQKTHPDSLSLSSVSTPASRVDHFEDLVAPGGWLAKYEISSKELRTNPMCSSRVKAVNSTTVEGEIPKKIRKGKNKETKSKVDKENNNNVEWDENGSKDDRLEKKMKEKVEEEDEESKVTEETKRWKKHNNSKGSEEIKKMDYVHVRARRGQATDSHSLAERARREKISERMKYLQNLVPGCNKIAGKAGMLDEIINYVQSLQQQVEFLSMKVAALNHRVDFINVDDLLAKQMFPTITDNCSSYNNQLGIMGSSSLTIPQTPLINTNLSSITHFEVSSTWGGELQRFEEGGGGPPLLSPSSFLSNQCSVIEDENETLFMDHKLLLPF* 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3494250 3497069 - Chy11G189570.1 Chy11g00377 236138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00377 335 MobiDBLite consensus disorder prediction 1 25 - -
Chy11g00377 335 CDD bHLH_AtBPE_like 150 236 - -
Chy11g00377 335 PANTHER TRANSCRIPTION FACTOR BHLH74 240 327 - -
Chy11g00377 335 PANTHER TRANSCRIPTION FACTOR BHLH74 2 239 - -
Chy11g00377 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 158 230 IPR036638 GO:0046983
Chy11g00377 335 Coils Coil 207 227 - -
Chy11g00377 335 SMART finulus 166 216 IPR011598 GO:0046983
Chy11g00377 335 Coils Coil 83 103 - -
Chy11g00377 335 Pfam Helix-loop-helix DNA-binding domain 164 211 IPR011598 GO:0046983
Chy11g00377 335 Gene3D - 157 232 IPR036638 GO:0046983
Chy11g00377 335 Coils Coil 110 131 - -
Chy11g00377 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 160 210 IPR011598 GO:0046983
Chy11g00377 335 MobiDBLite consensus disorder prediction 77 142 - -
Chy11g00377 335 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 240 327 IPR024097 GO:0006355
Chy11g00377 335 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 239 IPR024097 GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01083 Chy-Chr10:15909181 Chy11g00377 Chy-Chr11:3494250 1.10E-40 dispersed
Chy11g00377 Chy-Chr11:3494250 Chy07g00212 Chy-Chr7:1716195 1.83E-42 dispersed
Chy01g00774 Chy-Chr1:5949888 Chy11g00377 Chy-Chr11:3494250 1.80E-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18680 PF00010 HLH 2.60E-06 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00377 - - csv:101216346 587.8