Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00395 ATGGTAGTAGCTTCACCTTTTACTGCATCTCTCAGTTTCTCTGTCGCTTCGAACAATCGAACCTCATCCATTTCTCAACTTTCTCGAAGAAATTCACACAGGTCCATTGTCTCTGCTTTCCCGAGGCCTTATGGCGACTCCTCCACAATTGGATTATCAAGTAAAACAAATGGGGCACCTTTAAATCTTGACGATAAAGACTTTCTTCGCACCAGTACAAGTTATGAACCTATAGTGGCTAGGAGAGATAATCCACCCGTTATGCCTGCTGTGATGACACCAGGAGGGCCATTGGATCTCTCTTCTGTGTTATTTCGGAACCGTATTATATTTATTGGTCAACCTATCAACTCAACCGTGGCACAACGAGTTATATCACAGCTTGTGACTCTAGCAACAATTGATGAGGATGCAGATATTCTGGTATATCTGAATTGCCCTGGTGGAAGTACATACTCAATATTAGCAATTTATGATTGTATGTCTTGGATAAAGCCTAAGGTTGGTACAGTGTGCTTCGGAATTGTTGCAAGTCAAGGGGCTCTTCTCCTTGCAGGTGGAGAAAAGGGAATGCGCTATGCTATGCCAAATTCTCGAATTATGATTCATCAGCCACAAAGTGGATGTGGGGGTGATGTGGAGGATGTTAGACGTCAAGTCAATGAAGCAGTTCAATCACGCAATAAAATTGAAAAGATGTATGCTGCATTTACTGGCCAATCTATAGAGACAATACAACAATACATTGATAGGGATCGATTTTTGTCAGTTTCCGAGTCTGTGGAATCGTCATCTCCAAGCATCAAAGTCTCAGTTCGAATTTCCAGCAGCAGGCATCGTACCACTGGCAATCATGATCAAGATCTAGCAATTGAGAACACGATGATATGA 891 42.2 MVVASPFTASLSFSVASNNRTSSISQLSRRNSHRSIVSAFPRPYGDSSTIGLSSKTNGAPLNLDDKDFLRTSTSYEPIVARRDNPPVMPAVMTPGGPLDLSSVLFRNRIIFIGQPINSTVAQRVISQLVTLATIDEDADILVYLNCPGGSTYSILAIYDCMSWIKPKVGTVCFGIVASQGALLLAGGEKGMRYAMPNSRIMIHQPQSGCGGDVEDVRRQVNEAVQSRNKIEKMYAAFTGQSIETIQQYIDRDRFLSVSESVESSSPSIKVSVRISSSRHRTTGNHDQDLAIENTMI* 297
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3740254 3744672 - Chy11G189750.1 Chy11g00395 236156

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00395 296 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 6, CHLOROPLASTIC 13 262 - -
Chy11g00395 296 PANTHER ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT 13 262 IPR023562 -
Chy11g00395 296 ProSitePatterns Endopeptidase Clp histidine active site. 192 205 IPR033135 -
Chy11g00395 296 Gene3D - 79 264 - -
Chy11g00395 296 Pfam Clp protease 99 262 IPR023562 -
Chy11g00395 296 Coils Coil 213 233 - -
Chy11g00395 296 CDD S14_ClpP_2 99 255 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy11g00395 296 PRINTS Clp protease catalytic subunit P signature 170 187 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy11g00395 296 PRINTS Clp protease catalytic subunit P signature 248 267 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy11g00395 296 PRINTS Clp protease catalytic subunit P signature 139 159 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy11g00395 296 PRINTS Clp protease catalytic subunit P signature 191 210 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy11g00395 296 PRINTS Clp protease catalytic subunit P signature 99 114 IPR001907 GO:0004176|GO:0004252|GO:0006508
Chy11g00395 296 SUPERFAMILY ClpP/crotonase 98 262 IPR029045 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00395 K01358 clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] - csv:101213940 501.901
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy09g01142 Chy-Chr9:13650222 Chy11g00395 Chy-Chr11:3740254 2.56E-27 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g569 . . . Bda08g00901 . . Bma05g00475 . . . Cma02g00409 . Car02g00268 . . . . . . . . . . . . . . . . . . . . . . Lsi10g00353 . Chy11g00395 . . . . . . . . . . Cmo02g00413 . . . . . . Cpe05g01249 Bhi10g02028 Tan05g1325 Cmetu11g1874 . Hepe08g1028 . . . . . . . . . . Csa02g01243 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011349 2 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00395 Chy_Chr11 FPKM 66.902122 79.285782 83.345421 86.183479 30.179434 26.965286 29.182419 108.314354 107.393677 111.926643