Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00408 ATGGACGACTGTATTAGCAGCGATGAGGACTATTATGACTCCGATCGAGATTCTCTTCATGGTCTTGAGAACGAGGACTCTGAAATTCAGCGGGTTCCTAAAACTCCCTCTACTAAGGTTATTACGAAAGAATCTCTCCTTGCGGCACAGAAGGAGGACATGCGTAGAGTTATGGACTTGTTATCGTTGAGGGAATACCATGCTCGGACATTACTTATTCATTACCGATGGGATGTTGAGAAATTGTTTGCTGTACTTGTGGAGAAAGGGAAAAATCACTTGTTTGCTACAGCTGGTGTTACTATGATTGAGAATCGAAGTAATACTTCCTCTGAGGCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACGAGAGTGGATTGTGGTCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGATGCATGGCCCACAAATGCAATGCAATTTGTGATGAAGCTGTTGTTAGGACTCTAGTTAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCATACATTGAGGACAACAAAAGAGTCAAGTGGTGTCCAAGTACCCCTCATTGCGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCCGAGGCTCACTCACCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCAGAGATGAATCTGAAACTGTTAACTGGATTACAGTACATACAAAGCCCTGCCCAAAGTGCCATAAACCCGTCGAGAAGAATGGAGGTTGTAACCTCGTCAGCTGCATCTGTGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCTACGGGTCGTGAGCATACTTGGTCAAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAAAAAGCTGAGCGAGCAAAACGGGATTTGTACCGGTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAGTTGAAAGAATCTATACAAGAGAAGATCTCGATTTCAGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGGCTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTGAGGCGGAAAGGGAGATAAAGCAGCATCTATTTGAGGACCAGCAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAAGAGCCGTTCGATCAATATACTAAAGATAAGGTAATGGAGATACGCATGCAAGTCATCAATCTGTCAGTTATCACCGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAGGGCATCGAGAAGGCACTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTTCAGATAAATATCCACCATCTGACTGTGGTACAAGTGGAGGATTGTCGGAATGTGAACGACTGACTAGCTTGAATTCCGAGGAGAACGGATGCTCTTCTAGGAAACGTGCCAGAGCAGAAGTTGTTGCTGTCAACTTTTTTGATCTTAACTTGCCTGCTGAGGTTGTTGATAGAAACTGA 1770 42.43 MDDCISSDEDYYDSDRDSLHGLENEDSEIQRVPKTPSTKVITKESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKNHLFATAGVTMIENRSNTSSEASSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRTLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEAEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTSDKYPPSDCGTSGGLSECERLTSLNSEENGCSSRKRARAEVVAVNFFDLNLPAEVVDRN* 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3942825 3946589 - Chy11G189880.1 Chy11g00408 236169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00408 589 SMART ibrneu5 190 252 IPR002867 -
Chy11g00408 589 SMART ibrneu5 260 325 IPR002867 -
Chy11g00408 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Chy11g00408 589 Gene3D - 248 496 - -
Chy11g00408 589 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
Chy11g00408 589 MobiDBLite consensus disorder prediction 1 28 - -
Chy11g00408 589 Pfam Ariadne domain 329 589 IPR045840 -
Chy11g00408 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 516 IPR031127 GO:0004842|GO:0016567
Chy11g00408 589 SUPERFAMILY RING/U-box 191 259 - -
Chy11g00408 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 204 IPR013083 -
Chy11g00408 589 SUPERFAMILY RING/U-box 114 202 - -
Chy11g00408 589 SUPERFAMILY RING/U-box 260 325 - -
Chy11g00408 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Chy11g00408 589 MobiDBLite consensus disorder prediction 11 28 - -
Chy11g00408 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 516 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00408 K11968 ARIH1; ariadne-1 [EC:2.3.2.31] - csv:101205066 1186.4
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00713 Chy-Chr5:9450648 Chy11g00408 Chy-Chr11:3942825 2.73E-55 dispersed
Chy11g00408 Chy-Chr11:3942825 Chy07g00894 Chy-Chr7:12509122 2.72E-13 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy11g00408 . 164 590 ARIADNE family AT4G34370 72.7 2.0e-184 642.1
Chy11g00408 . 58 542 ARIADNE family AT2G16090 77.4 1.5e-225 778.9
Chy11g00408 . 28 543 ARIADNE family AT3G27710 61.9 1.0e-185 646.7
Chy11g00408 . 44 522 ARIADNE family AT3G27720 54.5 5.1e-144 508.1
Chy03g00386 . 69 563 ARIADNE family AT1G05890 68.7 2.7e-208 721.8
Chy05g00713 . 1 391 ARIADNE family AT1G05890 60.7 1.3e-154 543.5
Chy05g00715 . 1 139 ARIADNE family AT1G05890 69.8 2.3e-50 197.2
Chy03g00386 . 67 622 ARIADNE family AT1G65430 66.5 5.3e-230 793.9
Chy05g00713 . 20 392 ARIADNE family AT1G65430 74.4 4.4e-176 614.8
Chy05g00715 . 1 195 ARIADNE family AT1G65430 69.2 2.1e-69 260.4
Chy03g00386 . 69 488 ARIADNE family AT2G31780 53.7 2.5e-134 475.7
Chy05g00713 . 9 392 ARIADNE family AT2G31780 51.9 1.1e-121 433.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003767 0 4 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 5 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00408 Chy_Chr11 FPKM 37.53006 37.938538 34.410793 36.398155 36.433525 30.83749 36.008984 51.244957 51.661167 56.428631