Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00408 ATGGACGACTGTATTAGCAGCGATGAGGACTATTATGACTCCGATCGAGATTCTCTTCATGGTCTTGAGAACGAGGACTCTGAAATTCAGCGGGTTCCTAAAACTCCCTCTACTAAGGTTATTACGAAAGAATCTCTCCTTGCGGCACAGAAGGAGGACATGCGTAGAGTTATGGACTTGTTATCGTTGAGGGAATACCATGCTCGGACATTACTTATTCATTACCGATGGGATGTTGAGAAATTGTTTGCTGTACTTGTGGAGAAAGGGAAAAATCACTTGTTTGCTACAGCTGGTGTTACTATGATTGAGAATCGAAGTAATACTTCCTCTGAGGCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACGAGAGTGGATTGTGGTCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGATGCATGGCCCACAAATGCAATGCAATTTGTGATGAAGCTGTTGTTAGGACTCTAGTTAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCATACATTGAGGACAACAAAAGAGTCAAGTGGTGTCCAAGTACCCCTCATTGCGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCCGAGGCTCACTCACCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCAGAGATGAATCTGAAACTGTTAACTGGATTACAGTACATACAAAGCCCTGCCCAAAGTGCCATAAACCCGTCGAGAAGAATGGAGGTTGTAACCTCGTCAGCTGCATCTGTGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCTACGGGTCGTGAGCATACTTGGTCAAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAAAAAGCTGAGCGAGCAAAACGGGATTTGTACCGGTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAGTTGAAAGAATCTATACAAGAGAAGATCTCGATTTCAGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGGCTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTGAGGCGGAAAGGGAGATAAAGCAGCATCTATTTGAGGACCAGCAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAAGAGCCGTTCGATCAATATACTAAAGATAAGGTAATGGAGATACGCATGCAAGTCATCAATCTGTCAGTTATCACCGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAGGGCATCGAGAAGGCACTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTTCAGATAAATATCCACCATCTGACTGTGGTACAAGTGGAGGATTGTCGGAATGTGAACGACTGACTAGCTTGAATTCCGAGGAGAACGGATGCTCTTCTAGGAAACGTGCCAGAGCAGAAGTTGTTGCTGTCAACTTTTTTGATCTTAACTTGCCTGCTGAGGTTGTTGATAGAAACTGA 1770 42.43 MDDCISSDEDYYDSDRDSLHGLENEDSEIQRVPKTPSTKVITKESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKNHLFATAGVTMIENRSNTSSEASSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRTLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEAEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTSDKYPPSDCGTSGGLSECERLTSLNSEENGCSSRKRARAEVVAVNFFDLNLPAEVVDRN* 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 3942825 3946589 - Chy11G189880.1 Chy11g00408 236169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00408 589 SMART ibrneu5 190 252 IPR002867 -
Chy11g00408 589 SMART ibrneu5 260 325 IPR002867 -
Chy11g00408 589 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Chy11g00408 589 Gene3D - 248 496 - -
Chy11g00408 589 Pfam IBR domain, a half RING-finger domain 191 252 IPR002867 -
Chy11g00408 589 MobiDBLite consensus disorder prediction 1 28 - -
Chy11g00408 589 Pfam Ariadne domain 329 589 IPR045840 -
Chy11g00408 589 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 6 516 IPR031127 GO:0004842|GO:0016567
Chy11g00408 589 SUPERFAMILY RING/U-box 191 259 - -
Chy11g00408 589 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 204 IPR013083 -
Chy11g00408 589 SUPERFAMILY RING/U-box 114 202 - -
Chy11g00408 589 SUPERFAMILY RING/U-box 260 325 - -
Chy11g00408 589 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Chy11g00408 589 MobiDBLite consensus disorder prediction 11 28 - -
Chy11g00408 589 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 6 516 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy05g00713 Chy-Chr5:9450648 Chy11g00408 Chy-Chr11:3942825 2.73E-55 dispersed
Chy11g00408 Chy-Chr11:3942825 Chy07g00894 Chy-Chr7:12509122 2.72E-13 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00408 K11968 - csv:101205066 1186.4