Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g00408 | ATGGACGACTGTATTAGCAGCGATGAGGACTATTATGACTCCGATCGAGATTCTCTTCATGGTCTTGAGAACGAGGACTCTGAAATTCAGCGGGTTCCTAAAACTCCCTCTACTAAGGTTATTACGAAAGAATCTCTCCTTGCGGCACAGAAGGAGGACATGCGTAGAGTTATGGACTTGTTATCGTTGAGGGAATACCATGCTCGGACATTACTTATTCATTACCGATGGGATGTTGAGAAATTGTTTGCTGTACTTGTGGAGAAAGGGAAAAATCACTTGTTTGCTACAGCTGGTGTTACTATGATTGAGAATCGAAGTAATACTTCCTCTGAGGCTTCTTCCATGGTGATGTGTGATATCTGCATGGAGGAAGTACATGGCAATGATGCAACGAGAGTGGATTGTGGTCATTGCTTTTGTAATAACTGTTGGACTGAACATTTCATTGTGAAAATAAATGAGGGTCAAAGTCGGAGAATCAGATGCATGGCCCACAAATGCAATGCAATTTGTGATGAAGCTGTTGTTAGGACTCTAGTTAGTAAAAGGCATCCAGATCTTGCCAATAAATTTGATCGTTTTCTTCTTGAATCATACATTGAGGACAACAAAAGAGTCAAGTGGTGTCCAAGTACCCCTCATTGCGGCAATGCTATACGCGTGGAGGATGATGAGTTTTGTGAAGTAGAATGTTCGTGTGGTCTTCAGTTTTGTTTCAGTTGCTTATCCGAGGCTCACTCACCGTGTTCATGTTTGATGTGGGAACTTTGGATTAAGAAGTGCAGAGATGAATCTGAAACTGTTAACTGGATTACAGTACATACAAAGCCCTGCCCAAAGTGCCATAAACCCGTCGAGAAGAATGGAGGTTGTAACCTCGTCAGCTGCATCTGTGGTCAGGCATTTTGTTGGCTGTGTGGTGGAGCTACGGGTCGTGAGCATACTTGGTCAAGTATTTCTGGTCATAGTTGTGGGCGTTACAAAGAAGAATCAGAACAAAAAGCTGAGCGAGCAAAACGGGATTTGTACCGGTATATGCACTATCATAATCGGTACAAAGCTCATACAGATTCTTTTAAGCTTGAAAGCAAGTTGAAAGAATCTATACAAGAGAAGATCTCGATTTCAGAAGAGAGGGAATCCATGCTCAGAGATTTTAGTTGGGTAAACAATGGACTGTCTAGGCTTTTCAGATCAAGGCGGGTTCTATCATACTCTTACCCATTTGCATTCTATATGTTTGGGGATGAGCTATTCAAAGATGAGATGACTGAGGCGGAAAGGGAGATAAAGCAGCATCTATTTGAGGACCAGCAACAGCAACTTGAGGCAAATGTTGAGAAGCTCTCCAAGTTTTTAGAAGAGCCGTTCGATCAATATACTAAAGATAAGGTAATGGAGATACGCATGCAAGTCATCAATCTGTCAGTTATCACCGATACCCTCTGCAAGAAGATGTATGACTGTATTGAGAATGATCTTCTGGGTTCTCTTGAACTGGGTATCCACAATATTGCTCCTTACAAGTCGAAGGGCATCGAGAAGGCACTGGAGCTTTCTGCTTGTTGGAACAGCAAAGCAAATACTTCAGATAAATATCCACCATCTGACTGTGGTACAAGTGGAGGATTGTCGGAATGTGAACGACTGACTAGCTTGAATTCCGAGGAGAACGGATGCTCTTCTAGGAAACGTGCCAGAGCAGAAGTTGTTGCTGTCAACTTTTTTGATCTTAACTTGCCTGCTGAGGTTGTTGATAGAAACTGA | 1770 | 42.43 | MDDCISSDEDYYDSDRDSLHGLENEDSEIQRVPKTPSTKVITKESLLAAQKEDMRRVMDLLSLREYHARTLLIHYRWDVEKLFAVLVEKGKNHLFATAGVTMIENRSNTSSEASSMVMCDICMEEVHGNDATRVDCGHCFCNNCWTEHFIVKINEGQSRRIRCMAHKCNAICDEAVVRTLVSKRHPDLANKFDRFLLESYIEDNKRVKWCPSTPHCGNAIRVEDDEFCEVECSCGLQFCFSCLSEAHSPCSCLMWELWIKKCRDESETVNWITVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSISGHSCGRYKEESEQKAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKESIQEKISISEERESMLRDFSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMTEAEREIKQHLFEDQQQQLEANVEKLSKFLEEPFDQYTKDKVMEIRMQVINLSVITDTLCKKMYDCIENDLLGSLELGIHNIAPYKSKGIEKALELSACWNSKANTSDKYPPSDCGTSGGLSECERLTSLNSEENGCSSRKRARAEVVAVNFFDLNLPAEVVDRN* | 590 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 3942825 | 3946589 | - | Chy11G189880.1 | Chy11g00408 | 236169 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g00408 | 589 | SMART | ibrneu5 | 190 | 252 | IPR002867 | - | |
Chy11g00408 | 589 | SMART | ibrneu5 | 260 | 325 | IPR002867 | - | |
Chy11g00408 | 589 | ProSiteProfiles | Zinc finger RING-type profile. | 119 | 167 | IPR001841 | - | |
Chy11g00408 | 589 | Gene3D | - | 248 | 496 | - | - | |
Chy11g00408 | 589 | Pfam | IBR domain, a half RING-finger domain | 191 | 252 | IPR002867 | - | |
Chy11g00408 | 589 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Chy11g00408 | 589 | Pfam | Ariadne domain | 329 | 589 | IPR045840 | - | |
Chy11g00408 | 589 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 6 | 516 | IPR031127 | GO:0004842|GO:0016567 | |
Chy11g00408 | 589 | SUPERFAMILY | RING/U-box | 191 | 259 | - | - | |
Chy11g00408 | 589 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 112 | 204 | IPR013083 | - | |
Chy11g00408 | 589 | SUPERFAMILY | RING/U-box | 114 | 202 | - | - | |
Chy11g00408 | 589 | SUPERFAMILY | RING/U-box | 260 | 325 | - | - | |
Chy11g00408 | 589 | ProSiteProfiles | TRIAD supradomain profile. | 115 | 329 | IPR044066 | - | |
Chy11g00408 | 589 | MobiDBLite | consensus disorder prediction | 11 | 28 | - | - | |
Chy11g00408 | 589 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 6 | 516 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy05g00713 | Chy-Chr5:9450648 | Chy11g00408 | Chy-Chr11:3942825 | 2.73E-55 | dispersed | |
Chy11g00408 | Chy-Chr11:3942825 | Chy07g00894 | Chy-Chr7:12509122 | 2.72E-13 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g00408 | K11968 | - | csv:101205066 | 1186.4 |