Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00424 ATGACACATTCGAATGACGGTGGTGACCTTGGCTTCTTTGGAAATGTTTACATGGAGAACAATTTCCACAGTCAACAAATTCGTGCCCTTCAAGTTCTTGCTTCTCAGCTATTAGTGATAGCTTTTTGGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCCGATGGCCATGTTTGGCGTGTAGGTTTGAGGAAAGCCGACAATAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCAATACGGGTTGGGTATTTACTAGTATTCAGATATGAGGGAAACTCATCGTTCTGTGTTTTTATCTTTAATCTTAATACATCTGAAATAAACTATCAATCGGCTGCTCTCAGTAATAATCAAAGGAATAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGATATTCCTGAAGCCATTCCTTCCAATCAGTCCATGAATTCCGGTTCCTTGCGGAATAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTACAAGCTGAGTATTTATCTACTAGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGAGTTAAAAAGAGTGGAAGCAAAAAGCGGAAAATTGAGTCTAGCGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGACATTCGTTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACTCTGCAAAAGCTTTCGAGCCTGGTAATCCTTTCTGCCGAGTCGTCTTGCGACCATCCTATCTATATAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCGGGATTCATCAAACTTCAGACACCTGATGGGAGACAATGGCCGGTCCGATGCCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGATGTTTGTGTGTTTGAGCTTCTTAGGATGAGAGAAATTGTACTCAAAGTTACTATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAAACCCAAATCCTGCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCACATTAAGCTGATCAGAAATTAA 1263 40.78 MTHSNDGGDLGFFGNVYMENNFHSQQIRALQVLASQLLVIAFWRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSSFCVFIFNLNTSEINYQSAALSNNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDAAHRVKKSGSKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMANPNPASMMNPPPLRSVSHIKLIRN* 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4109658 4117016 - Chy11G190040.1 Chy11g00424 236185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00424 420 CDD B3_DNA 292 387 IPR003340 GO:0003677
Chy11g00424 420 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 43 175 - -
Chy11g00424 420 SMART B3_2 294 389 IPR003340 GO:0003677
Chy11g00424 420 SMART B3_2 29 121 IPR003340 GO:0003677
Chy11g00424 420 ProSiteProfiles B3 DNA-binding domain profile. 28 121 IPR003340 GO:0003677
Chy11g00424 420 PANTHER B3 DOMAIN-CONTAINING 43 175 - -
Chy11g00424 420 Gene3D - 271 391 IPR015300 -
Chy11g00424 420 SUPERFAMILY DNA-binding pseudobarrel domain 289 388 IPR015300 -
Chy11g00424 420 PANTHER B3 DOMAIN-CONTAINING 237 418 - -
Chy11g00424 420 Pfam B3 DNA binding domain 44 118 IPR003340 GO:0003677
Chy11g00424 420 Pfam B3 DNA binding domain 297 387 IPR003340 GO:0003677
Chy11g00424 420 SUPERFAMILY DNA-binding pseudobarrel domain 38 121 IPR015300 -
Chy11g00424 420 CDD B3_DNA 44 119 IPR003340 GO:0003677
Chy11g00424 420 Gene3D - 15 122 IPR015300 -
Chy11g00424 420 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 237 418 - -
Chy11g00424 420 ProSiteProfiles B3 DNA-binding domain profile. 294 389 IPR003340 GO:0003677
Chy11g00424 420 MobiDBLite consensus disorder prediction 224 252 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01500 Chy-Chr3:17371339 Chy11g00424 Chy-Chr11:4109658 8.35E-32 dispersed
Chy11g00144 Chy-Chr11:1488567 Chy11g00424 Chy-Chr11:4109658 3.47E-31 dispersed
Chy11g00423 Chy-Chr11:4098532 Chy11g00424 Chy-Chr11:4109658 3.78E-57 tandem
Chy07g01350 Chy-Chr7:18117375 Chy11g00424 Chy-Chr11:4109658 2.93E-30 transposed
Chy11g00424 Chy-Chr11:4109658 Chy02g00943 Chy-Chr2:6225349 6.69E-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18682 PF02362 B3 5.90E-18 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00424 - - csv:101213446 756.518