Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g00424 | ATGACACATTCGAATGACGGTGGTGACCTTGGCTTCTTTGGAAATGTTTACATGGAGAACAATTTCCACAGTCAACAAATTCGTGCCCTTCAAGTTCTTGCTTCTCAGCTATTAGTGATAGCTTTTTGGAGAATCCCAGAAACTTTTGTCAGGATGATCAGGGATGAGCTTTCAGCAGTTGCAACCCTTACTGTTCCCGATGGCCATGTTTGGCGTGTAGGTTTGAGGAAAGCCGACAATAAATTTTGGTTTGAAGATGGATGGCAAGGATTTCTTGAGCATTACTCAATACGGGTTGGGTATTTACTAGTATTCAGATATGAGGGAAACTCATCGTTCTGTGTTTTTATCTTTAATCTTAATACATCTGAAATAAACTATCAATCGGCTGCTCTCAGTAATAATCAAAGGAATAATTACAGCATTCAAAACCGAATCTTTGAAGAAATGGAGGATTATGATATTCCTGAAGCCATTCCTTCCAATCAGTCCATGAATTCCGGTTCCTTGCGGAATAAGCTATTTGGTGATGAATGGAATCTGCACCAATCAAAATCTGCAAGTACGTTACAAGCTGAGTATTTATCTACTAGAGATATTGGGGTTCAGTTTAGTGCTGTGGAGGTTAAAAAATCTGCAGATGAGGTGAGATTCCAGAATTTGGGTGATGATGCAGCACACAGAGTTAAAAAGAGTGGAAGCAAAAAGCGGAAAATTGAGTCTAGCGAGCACCATCCATCTGCTCATAATAGTGAAGATTTAGGAGACATTCGTTTTAGATTTTATGAAAGTGCTTCTGCTAGAAAGAGAACTGTGACAGCAGAAGAAAGAGAAAGAGCTATCAACTCTGCAAAAGCTTTCGAGCCTGGTAATCCTTTCTGCCGAGTCGTCTTGCGACCATCCTATCTATATAGAGGTTGCATAATGTATTTGCCATCTTGCTTTGCTGAAAAGAATCTAAGTGGGGTTTCGGGATTCATCAAACTTCAGACACCTGATGGGAGACAATGGCCGGTCCGATGCCTTTATAAAGTTGGTAGAGCGAAGTTAAGTCAGGGATGGTATGAGTTTTGCCTGGAAAATAATTTAGGGGAGGGCGATGTTTGTGTGTTTGAGCTTCTTAGGATGAGAGAAATTGTACTCAAAGTTACTATGTTTCGTGTCATTGAAGAAGGCGGACGAATGGCAAACCCAAATCCTGCTAGCATGATGAATCCACCTCCGCTGCGAAGTGTTAGCCACATTAAGCTGATCAGAAATTAA | 1263 | 40.78 | MTHSNDGGDLGFFGNVYMENNFHSQQIRALQVLASQLLVIAFWRIPETFVRMIRDELSAVATLTVPDGHVWRVGLRKADNKFWFEDGWQGFLEHYSIRVGYLLVFRYEGNSSFCVFIFNLNTSEINYQSAALSNNQRNNYSIQNRIFEEMEDYDIPEAIPSNQSMNSGSLRNKLFGDEWNLHQSKSASTLQAEYLSTRDIGVQFSAVEVKKSADEVRFQNLGDDAAHRVKKSGSKKRKIESSEHHPSAHNSEDLGDIRFRFYESASARKRTVTAEERERAINSAKAFEPGNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLSGVSGFIKLQTPDGRQWPVRCLYKVGRAKLSQGWYEFCLENNLGEGDVCVFELLRMREIVLKVTMFRVIEEGGRMANPNPASMMNPPPLRSVSHIKLIRN* | 421 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 4109658 | 4117016 | - | Chy11G190040.1 | Chy11g00424 | 236185 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g00424 | 420 | CDD | B3_DNA | 292 | 387 | IPR003340 | GO:0003677 | |
Chy11g00424 | 420 | PANTHER | B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN | 43 | 175 | - | - | |
Chy11g00424 | 420 | SMART | B3_2 | 294 | 389 | IPR003340 | GO:0003677 | |
Chy11g00424 | 420 | SMART | B3_2 | 29 | 121 | IPR003340 | GO:0003677 | |
Chy11g00424 | 420 | ProSiteProfiles | B3 DNA-binding domain profile. | 28 | 121 | IPR003340 | GO:0003677 | |
Chy11g00424 | 420 | PANTHER | B3 DOMAIN-CONTAINING | 43 | 175 | - | - | |
Chy11g00424 | 420 | Gene3D | - | 271 | 391 | IPR015300 | - | |
Chy11g00424 | 420 | SUPERFAMILY | DNA-binding pseudobarrel domain | 289 | 388 | IPR015300 | - | |
Chy11g00424 | 420 | PANTHER | B3 DOMAIN-CONTAINING | 237 | 418 | - | - | |
Chy11g00424 | 420 | Pfam | B3 DNA binding domain | 44 | 118 | IPR003340 | GO:0003677 | |
Chy11g00424 | 420 | Pfam | B3 DNA binding domain | 297 | 387 | IPR003340 | GO:0003677 | |
Chy11g00424 | 420 | SUPERFAMILY | DNA-binding pseudobarrel domain | 38 | 121 | IPR015300 | - | |
Chy11g00424 | 420 | CDD | B3_DNA | 44 | 119 | IPR003340 | GO:0003677 | |
Chy11g00424 | 420 | Gene3D | - | 15 | 122 | IPR015300 | - | |
Chy11g00424 | 420 | PANTHER | B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN | 237 | 418 | - | - | |
Chy11g00424 | 420 | ProSiteProfiles | B3 DNA-binding domain profile. | 294 | 389 | IPR003340 | GO:0003677 | |
Chy11g00424 | 420 | MobiDBLite | consensus disorder prediction | 224 | 252 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy03g01500 | Chy-Chr3:17371339 | Chy11g00424 | Chy-Chr11:4109658 | 8.35E-32 | dispersed | |
Chy11g00144 | Chy-Chr11:1488567 | Chy11g00424 | Chy-Chr11:4109658 | 3.47E-31 | dispersed | |
Chy11g00423 | Chy-Chr11:4098532 | Chy11g00424 | Chy-Chr11:4109658 | 3.78E-57 | tandem | |
Chy07g01350 | Chy-Chr7:18117375 | Chy11g00424 | Chy-Chr11:4109658 | 2.93E-30 | transposed | |
Chy11g00424 | Chy-Chr11:4109658 | Chy02g00943 | Chy-Chr2:6225349 | 6.69E-06 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
18682 | PF02362 | B3 | 5.90E-18 | CL0405 | Chy | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g00424 | - | - | csv:101213446 | 756.518 |