Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00429 ATGCATTATTTGAATCTCCTTCTCCTCCTCCTCTTCTTCTTCTTCCTCTTCCTTTCTCCCACACTAACCAAATCCCTATCAGATCCGCCCCCTAGCACCGACGTAGGCGGCGGTGGAGGAAAGCACTTCGTCCTAGTTCACGGAGCCTGCCTGGGGGCCTGGTCGTGGTACAAGCTATCAACGCTGCTCCGATCGGCGGGGCATCGGGTGACAGCGTTAGACATGGCGGGGGCTGGAATTGATCCCCGGGAGGCGGAGAGGCTGAAATCGTTCAACGAATACGTTGAGCCGTTGAGAAATTTGATGGGGGAGGTGGGGGAGGAGGAGAAGGTGATTCTGGTAGGGCACAGTCAAGGCGGGCTTTGCATATCGAAGGCAATGGAGGAATTTCCGGAGAAAATAAGTGTTGCGGTTTTTGTGGTTGCCGCTATGCCTGGCCCAGCCCTAAACGCTTCATTTCTAATTGGGCAGTTACGGAAGAGGTTAGATTTTGGGCCAGACAGCCGTTATACATATGGTAATGGGCCCAGAAGCCCACCAACAACTTTGACATTTGGCCCATTGTTCTTGGCCGCAAAAGTATTCAACAAAAGCCCCCGGGAGGACTTGACATTAGGGAGGACATTGGTGAGACCAACCCATCTGTTTGGAGGAGAGCAATGGAACAAAGATTTAGTTTTGACAAAGGAAAGATATGGGTCTGTCAAAAGAGTTTTTGTTGTTTCGGATAATGATAAGGTCATCAAGAAAAGCTTCCAAAAATGGGTTATTCGTAGAAACCCACCTGATGGTGTTGTGGAAGTTAAAGGATCTGATCATATGGTCATGATGTCTAAGCCTTTGCATCTCTTCAACATACTTTCACACATTGCTCGTCAACATTCTTAA 888 48.76 MHYLNLLLLLLFFFFLFLSPTLTKSLSDPPPSTDVGGGGGKHFVLVHGACLGAWSWYKLSTLLRSAGHRVTALDMAGAGIDPREAERLKSFNEYVEPLRNLMGEVGEEEKVILVGHSQGGLCISKAMEEFPEKISVAVFVVAAMPGPALNASFLIGQLRKRLDFGPDSRYTYGNGPRSPPTTLTFGPLFLAAKVFNKSPREDLTLGRTLVRPTHLFGGEQWNKDLVLTKERYGSVKRVFVVSDNDKVIKKSFQKWVIRRNPPDGVVEVKGSDHMVMMSKPLHLFNILSHIARQHS* 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4134944 4137503 + Chy11G190090.1 Chy11g00429 236190

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00429 295 Gene3D alpha/beta hydrolase 40 295 IPR029058 -
Chy11g00429 295 SUPERFAMILY alpha/beta-Hydrolases 36 293 IPR029058 -
Chy11g00429 295 PANTHER ESTERASE PIR7A-RELATED 37 293 - -
Chy11g00429 295 Pfam Alpha/beta hydrolase family 43 283 IPR000073 -
Chy11g00429 295 PANTHER METHYLESTERASE FAMILY MEMBER 37 293 IPR045889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00429 - - - csv:101207795 560.066
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy01g00026 Chy11g00429 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00026 Chy-Chr1:183695 Chy11g00429 Chy-Chr11:4134944 4.86E-97 dispersed
Chy02g00934 Chy-Chr2:6178288 Chy11g00429 Chy-Chr11:4134944 3.57E-71 dispersed
Chy02g00935 Chy-Chr2:6184828 Chy11g00429 Chy-Chr11:4134944 8.03E-69 dispersed
Chy02g00937 Chy-Chr2:6189021 Chy11g00429 Chy-Chr11:4134944 2.19E-12 dispersed
Chy09g00017 Chy-Chr9:199961 Chy11g00429 Chy-Chr11:4134944 1.29E-52 transposed
Chy09g00119 Chy-Chr9:985812 Chy11g00429 Chy-Chr11:4134944 4.64E-44 transposed
Chy09g00194 Chy-Chr9:1669393 Chy11g00429 Chy-Chr11:4134944 7.57E-52 transposed
Chy01g00023 Chy-Chr1:173683 Chy11g00429 Chy-Chr11:4134944 1.95E-84 wgd
Chy11g00429 Chy-Chr11:4134944 Chy02g00933 Chy-Chr2:6174079 3.81E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g484 . . . . . . . . . . . . . . . . . . . . . . . . Cla02g00573 Cam02g0604 Cec02g0604 Cco02g0617 Clacu02g0599 Cmu02g0597 Cre02g0927 . Cone8ag1161 . . . Csa07g00793 Chy11g00429 Cme01g00021 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00026 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000481 0 4 0 1 0 6 3 6 4 3 4 4 3 4 5 4 4 6 3 5 4 5 3 3 7 4 5 3 4 5 112
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00429 Chy_Chr11 FPKM 0.0 0.0 3.050088 1.833579 0.0 0.0 0.0 0.0 0.300633 0.0