Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00436 ATGGCGCAACTGAATCCAGAAGAGAAGTTTAGTGAAAACCACTCTGAAATGGAGGTCAATCAAGAAGCTATCATCAATAGCGAAAGCGATGGAAGTAGTAATAGCAGTCTTGCTAATTTGGCCTTCAGATTTAATGCTCAAGCGCCTGAGTTTTTCCCTAGAACGCAAACCCAGATGCCTGTTACCGGTTATTTTCATCCCTATTTTCATTTTCTAGGTGGGGGCCCTGCTTCTTCAGATTGGTTCTTTATTGGGGACCAAGAACCTGCTTATTTGATCCCTAATCCCAACATTCAGCTCCCTAATTTCTCTAAGCATGCTCGTTCTGAGGAGATTCAGCAAAAAATCGTCAAACAGGTAGAATATCAGCTTAGTGACATGAGTCTTCTTGCAAATGAGACTCTTGCAAAACACATTAGTAAAGATCCCGATGGTTATGTTCCGATTTCTATTCTTTCGTCGACAAAAAAAGTTAAGTCTCTCTCAACCAACAACAATTTCATAGTTCAAGCACTCCGCTCCTCTTCAAGGCTTGTTGTCAGTTCTGATGGGAAGAGAGTTAGGCGTAAGGTTCCATTCACAGACAAGGACAAAGAGGAATTGCTGGCCCGCACAGTTGTTGCTGAGAATTTGCCCGAAAATCACTCGCATCACAATCTGGAGAAAATATTCAGTGTGGTTGGAAGTGTGAAAACCATCCGAATCTGTCATCCCCCGGAATCGAATCCCTGCTGCTCTAAAGGTGAATTGTTTGTCAGTAACAAGCTTCATGCACTCGTGGAGTTTGAGACAGCAGAATTAGCTGAAAGAGCGATTGAGCAGTTAAACGATGAGAGAAACTGGAGGAAAGGACTCCGAGTGAGGCCACTGGTGAGACGCTCGCCGAAATCTGTTCTGAAGAATCGAAAATCAGAATTTGATAGCATTTTGGATGAAGATGATTCACCATCTCCTGTATCCGTTGAAGAGTCCCCACTGCAAAATATCAATGACCTGATTGTCGATTGCAATTCTGAAGAGAACTCTACATCATTGAAGAAGAGCTGGGGTCGAGGACGTGGGAAGGGCCGTGGACGAACTCATGGCAATCTCGATCGTAGCTATAGCTTGCCGATTACATCATCTCTGCAGACAAGTGGGCAGGTTTTGTGTGAAGCTTCTTCCAAACTGACTACAAAGAGTCCAAGAATGCCTGATGGGACTAAAGGTTTCACCATGGGAAGAGGCAAGCCATTAAGCTCTAAACCTCTAGTCAATAGGCTTGTTGACTGA 1272 43.95 MAQLNPEEKFSENHSEMEVNQEAIINSESDGSSNSSLANLAFRFNAQAPEFFPRTQTQMPVTGYFHPYFHFLGGGPASSDWFFIGDQEPAYLIPNPNIQLPNFSKHARSEEIQQKIVKQVEYQLSDMSLLANETLAKHISKDPDGYVPISILSSTKKVKSLSTNNNFIVQALRSSSRLVVSSDGKRVRRKVPFTDKDKEELLARTVVAENLPENHSHHNLEKIFSVVGSVKTIRICHPPESNPCCSKGELFVSNKLHALVEFETAELAERAIEQLNDERNWRKGLRVRPLVRRSPKSVLKNRKSEFDSILDEDDSPSPVSVEESPLQNINDLIVDCNSEENSTSLKKSWGRGRGKGRGRTHGNLDRSYSLPITSSLQTSGQVLCEASSKLTTKSPRMPDGTKGFTMGRGKPLSSKPLVNRLVD* 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4255695 4258410 + Chy11G190160.1 Chy11g00436 236197

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00436 423 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Chy11g00436 423 Gene3D - 108 195 IPR036388 -
Chy11g00436 423 SUPERFAMILY RNA-binding domain, RBD 190 299 IPR035979 GO:0003676
Chy11g00436 423 Gene3D - 196 297 IPR012677 -
Chy11g00436 423 MobiDBLite consensus disorder prediction 344 367 - -
Chy11g00436 423 MobiDBLite consensus disorder prediction 391 423 - -
Chy11g00436 423 PANTHER LA-RELATED PROTEIN 6C 1 414 - -
Chy11g00436 423 SUPERFAMILY Winged helix DNA-binding domain 106 193 IPR036390 -
Chy11g00436 423 Pfam La domain 116 173 IPR006630 -
Chy11g00436 423 CDD RRM_La_like_plant 204 290 IPR034878 GO:0003723
Chy11g00436 423 PANTHER LUPUS LA PROTEIN-RELATED 1 414 IPR045180 -
Chy11g00436 423 ProSiteProfiles La-type HTH domain profile. 106 197 IPR006630 -
Chy11g00436 423 SMART rrm1_1 205 288 IPR000504 GO:0003723
Chy11g00436 423 SMART la 110 190 IPR006630 -
Chy11g00436 423 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 204 292 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00436 K15191 LARP7; La-related protein 7 - csv:101217948 767.303
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00935 Chy-Chr1:9000293 Chy11g00436 Chy-Chr11:4255695 1.63E-53 dispersed
Chy02g00151 Chy-Chr2:1093465 Chy11g00436 Chy-Chr11:4255695 4.93E-51 dispersed
Chy11g00436 Chy-Chr11:4255695 Chy02g00546 Chy-Chr2:3282374 2.46E-09 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g467 . . . . . Bpe12g00064 . . . . Cma02g00438 . Car02g00296 . . . . . . . . . . . . . . . . . . Cone12ag1111 Cone8ag1153 . . Lsi10g00312 . Chy11g00436 . . Blo13g00567 Bda15g00027 . . . . . Sed01g0334 Cmo02g00443 . . . . . . Cpe05g01224 Bhi10g02075 Tan05g1392 Cmetu11g0139 . . . . Cla09g01715 Cam09g1809 Cec09g1871 Cco09g1964 . . Cre01g0696 . Csa02g01201 . Cme11g00508
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008129 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 0 1 1 1 1 2 2 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00436 Chy_Chr11 FPKM 0.526235 1.156614 1.813239 1.774454 4.090984 3.570739 5.156897 1.2897 1.755942 1.448443