Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00439 ATGCCCATACCAAGGTGCTTCTTAGACATTACCATAGGCGGGGAGCTTGAAGGAAGAATCGTTATCGAGCTTTACAATCACCTCGTTCCTAAAACTGCTGAGAATTTCAGGGCCCTTTGCACTGTGCTGCGTCTAGCGTGGGCTTGCCTAGGTGTGCTTTTCAAAACAGCATGTAAGGCGACCAATCTAGTCATAGCAATAGCATCACTCGGGTGCAAGGGTGTCTGCTTTCATCGTGTAATCAAAGGGTTTATGATTCAAGGTGGGGACATTTCCGCTGGCGATGGTACTGGGGGAGAATCTATTTATGGTTTGAAATTTGAAGATGAAAATTTTGAACTGAAACATGAAAGGAAAGGAATGTTGTCTATGGCTAACTCTGGTCCCAACACCAATGGGTCTCAATTTTTCATAACAACAACACGTGCACCTCATTTGGATGGAAATCATGTAGTCTTTGGGAAGGTGGTCAAAGGAATGGGAGTAGTTCGTTCAATTGAACATGTTATAACCGGTGAGAATGATCGTCCAACTCTTGATGTTGTAATTGCGGATTGTGGAGAAATCCCTGAAGGGTCGCATGATGGAGTATCAAATTTGTTCAAGGACGGTGATACCTTTCCTGATTGGCCAGCTGATCTAGACCAGAGTCCTTTTGAACTTTCTTGGTGGATGAGCGCTGCGGATTCTATCAAGGCTTTTGGTAATGTACATTTTAAGAAGCAAGATTACAAGATGGCTCTCAGAAAGTACAGGAAGGCTTTGCGATATCTTGACATTTGCTGGGAGAGAGAAGGGATTGATGAAGAGAAGAGTACGTGTCTGAGGAAGACCAAATCGCAGATATTCACAAACAGCTCTGCTTGTAAACTGAAGTTAGGGGATCTAAAGGGAGCATTATTGGAAACTGAATTTGCAATTCGTGAAGGGGTGAACAATGTAAAAGCCGTGTTCCGCCAAGGCCAGGCACACATGGCTCTTAATGACATTGATTCTGCAGTTGAAAGCTTTAAAAGGGCATTGGATTTGGAGCCAAATGATGCTGGAATAAAGAAAGAGCTCGCTGCTGCTAAGAAAAAGATTGCTGATAGACGTGATCAAGAGAGGAAAGCATATGGCAAGATGTTCCTATAG 1134 43.47 MPIPRCFLDITIGGELEGRIVIELYNHLVPKTAENFRALCTVLRLAWACLGVLFKTACKATNLVIAIASLGCKGVCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANSGPNTNGSQFFITTTRAPHLDGNHVVFGKVVKGMGVVRSIEHVITGENDRPTLDVVIADCGEIPEGSHDGVSNLFKDGDTFPDWPADLDQSPFELSWWMSAADSIKAFGNVHFKKQDYKMALRKYRKALRYLDICWEREGIDEEKSTCLRKTKSQIFTNSSACKLKLGDLKGALLETEFAIREGVNNVKAVFRQGQAHMALNDIDSAVESFKRALDLEPNDAGIKKELAAAKKKIADRRDQERKAYGKMFL* 378
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4303231 4308712 + Chy11G190190.1 Chy11g00439 236200

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00439 377 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP40 2 376 - -
Chy11g00439 377 Gene3D Tetratricopeptide repeat domain 224 377 IPR011990 GO:0005515
Chy11g00439 377 ProSiteProfiles TPR repeat region circular profile. 314 347 - -
Chy11g00439 377 ProSiteProfiles TPR repeat profile. 314 347 IPR019734 GO:0005515
Chy11g00439 377 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 188 IPR002130 GO:0000413|GO:0003755
Chy11g00439 377 SUPERFAMILY Cyclophilin-like 2 189 IPR029000 -
Chy11g00439 377 SUPERFAMILY TPR-like 226 372 IPR011990 GO:0005515
Chy11g00439 377 SMART tpr_5 314 347 IPR019734 GO:0005515
Chy11g00439 377 SMART tpr_5 228 261 IPR019734 GO:0005515
Chy11g00439 377 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Chy11g00439 377 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 120 135 IPR002130 GO:0000413|GO:0003755
Chy11g00439 377 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 77 89 IPR002130 GO:0000413|GO:0003755
Chy11g00439 377 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Chy11g00439 377 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 147 IPR002130 GO:0000413|GO:0003755
Chy11g00439 377 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 2 376 - -
Chy11g00439 377 Pfam Tetratricopeptide repeat 315 347 IPR013105 -
Chy11g00439 377 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 187 IPR002130 GO:0000413|GO:0003755
Chy11g00439 377 Gene3D - 2 195 IPR029000 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00439 K05864 PPID, CYPD; peptidyl-prolyl isomerase D [EC:5.2.1.8] - csv:101207288 661.759
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy01g00036 Chy11g00439 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00439 Chy-Chr11:4303231 Chy01g00696 Chy-Chr1:5088003 1.09E-55 dispersed
Chy01g01763 Chy-Chr1:23289808 Chy11g00439 Chy-Chr11:4303231 1.09E-12 transposed
Chy04g01907 Chy-Chr4:25100507 Chy11g00439 Chy-Chr11:4303231 4.59E-36 transposed
Chy05g00683 Chy-Chr5:8781528 Chy11g00439 Chy-Chr11:4303231 3.12E-10 transposed
Chy06g00229 Chy-Chr6:1498008 Chy11g00439 Chy-Chr11:4303231 1.10E-30 transposed
Chy08g00687 Chy-Chr8:14709427 Chy11g00439 Chy-Chr11:4303231 2.88E-09 transposed
Chy12g00717 Chy-Chr12:10735717 Chy11g00439 Chy-Chr11:4303231 7.71E-36 transposed
Chy01g00036 Chy-Chr1:251024 Chy11g00439 Chy-Chr11:4303231 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g464 . . . . . Bpe12g00062 . . . Cmo11g01347 . Cma20g00888 . Car20g00765 . Cpe04g00267 . Bhi05g01141 . . . Hepe02g0569 . . Cla02g00581 Cam02g0614 Cec02g0613 Cco02g0629 Clacu02g0610 Cmu02g0607 Cre02g0938 . Cone8ag1151 Cone3ag1116 Cone10ag1127 Lsi10g00310 Csa07g00780 Chy11g00439 Cme01g00031 . Blo13g00569 Bda15g00028 . . . . . Sed05g3656 . Cmo20g00895 Cma11g01765 . Car11g01085 . . . Bhi10g02077 Tan05g1396 Cmetu11g0215 . Hepe08g1064 . . Cla09g01711 Cam09g1807 Cec09g1868 Cco09g1961 . . Cre01g0699 Lsi11g01025 Csa02g01199 Chy01g00036 Cme11g00511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002414 1 5 1 0 1 2 2 2 2 2 2 2 2 2 2 1 2 3 2 2 2 2 2 2 2 2 2 2 6 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00439 Chy_Chr11 FPKM 7.520345 9.284367 1.993344 2.224935 4.009064 3.174885 3.310184 1.858001 1.769505 1.224911