Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00443 ATGGCTCAGCCTTCAAACGGTGCCGATCTCAATCCCCAGGCTCCTCATCCTCACCACCAATGGTTTCAACAACAACAACAGTATCAGCAGCAATGGATGGCGATGCAGTACCCTGCCGCCGCCATGGCCATGATGCACCAACAGCAGATGGTGATGTATCCTCCTCAGCATTATATGGCGTATTCTCACCATCCTTATCAACAGCAACAACAGCAACAGCAGCAGCCGTCGTCGCAACAGCAGCAACAGCATGCTCAGTCGCAGAGACCTCGTAGACAGGGGTCAACGGACGAGGTTAAGACGCTTTGGATTGGTGACCTTCAGCCTTGGATGGACGAGACCTACCTCAATAATTGTTTCGCTCACACCGGCGAGGTTTCCTCTGTTAAGGTTATATGCAATAAGCAAACTGGTCAATCGGAGGGCTATGGTTTTGTTGAGTTCTTCTCGCATACGACAGCCGAAAAAGTATTGCAGAATTATAATGGTACTATCATGCCTAATACAGAGCTGCCTTACCGTCTCAATTGGGCAACCTTTAGTGCAAATGATAGGCGACCGGACACTGGTTCTGACCTATCAATATTTGTTGGTGACTTGGCTGCCGATGTGACTGATGCTATACTGCAAGAAACTTTTTCTAGTAGATACACATCTGTTAAAGGCGCAAAGGTGGTTATTGATTCAAATTCAGGCCGTTCAAAAGGTTATGGCTTTGTCAGGTTTGGTGATGAAAATGAAAGGACAAGGGCTATGACTGAAATGAATGGGATATATTGTTCAAGTAGACCCATGCGCATTGGTGTTGCAACACCAAAGAAAGCATCTGGATATCAACAAGGTTACGCTTCACAAGCTTTGGTACTAGCCGGTGGACATCCCAATGGCATGGCTGTTCAGGGTTCACAATCAGACAGCGAGTCAAACAACACGACTATATTTGTTGGTGGTCTCGATTCTGATGTTAGTGATGAAGATCTGAAGCAAGCTTTCTCTAAGTTTGGAGACGTTGTCTCTGTGAAAATTCCAATTGGAAAAGGATGTGGATTTGTGCAATTTGCTAACAGAAAGAATGCTGAGGATGCAATACAGGGACTGAATGGAACAGTTATAGGGAAGCAAACTGTTCGTCTTTCTTGGGGCCGAAGTACAGGGAACAAGCAGTGGAGAGGTGATTCAAATAACCAATGGAATGGTGGACGTTATGGTGGGCAAAGCTATGGTGGATATGGTGGCTATTACTCTGTACCACAGCATCAGGACCCAAACATGCATCCTACAGCTGCTGCTGCTGCAGTTAATGGCTCATCTTGA 1314 46.12 MAQPSNGADLNPQAPHPHHQWFQQQQQYQQQWMAMQYPAAAMAMMHQQQMVMYPPQHYMAYSHHPYQQQQQQQQQPSSQQQQQHAQSQRPRRQGSTDEVKTLWIGDLQPWMDETYLNNCFAHTGEVSSVKVICNKQTGQSEGYGFVEFFSHTTAEKVLQNYNGTIMPNTELPYRLNWATFSANDRRPDTGSDLSIFVGDLAADVTDAILQETFSSRYTSVKGAKVVIDSNSGRSKGYGFVRFGDENERTRAMTEMNGIYCSSRPMRIGVATPKKASGYQQGYASQALVLAGGHPNGMAVQGSQSDSESNNTTIFVGGLDSDVSDEDLKQAFSKFGDVVSVKIPIGKGCGFVQFANRKNAEDAIQGLNGTVIGKQTVRLSWGRSTGNKQWRGDSNNQWNGGRYGGQSYGGYGGYYSVPQHQDPNMHPTAAAAAVNGSS* 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4340936 4351811 - Chy11G190230.1 Chy11g00443 236204

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00443 437 Gene3D - 192 269 IPR012677 -
Chy11g00443 437 MobiDBLite consensus disorder prediction 64 90 - -
Chy11g00443 437 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 430 - -
Chy11g00443 437 Gene3D - 58 191 IPR012677 -
Chy11g00443 437 CDD RRM3_NGR1_NAM8_like 310 381 - -
Chy11g00443 437 MobiDBLite consensus disorder prediction 64 98 - -
Chy11g00443 437 CDD RRM2_SECp43_like 192 271 - -
Chy11g00443 437 CDD RRM1_SECp43_like 101 181 - -
Chy11g00443 437 MobiDBLite consensus disorder prediction 1 24 - -
Chy11g00443 437 SMART rrm1_1 312 379 IPR000504 GO:0003723
Chy11g00443 437 SMART rrm1_1 194 268 IPR000504 GO:0003723
Chy11g00443 437 SMART rrm1_1 101 174 IPR000504 GO:0003723
Chy11g00443 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 376 IPR000504 GO:0003723
Chy11g00443 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 265 IPR000504 GO:0003723
Chy11g00443 437 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 171 IPR000504 GO:0003723
Chy11g00443 437 SUPERFAMILY RNA-binding domain, RBD 64 183 IPR035979 GO:0003676
Chy11g00443 437 Gene3D - 294 418 IPR012677 -
Chy11g00443 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 272 IPR000504 GO:0003723
Chy11g00443 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 383 IPR000504 GO:0003723
Chy11g00443 437 SUPERFAMILY RNA-binding domain, RBD 175 285 IPR035979 GO:0003676
Chy11g00443 437 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 180 IPR000504 GO:0003723
Chy11g00443 437 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47B 19 430 - -
Chy11g00443 437 SUPERFAMILY RNA-binding domain, RBD 302 413 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00443 - - - csv:101215609 768.074
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy07g00112 Chy-Chr7:986775 Chy11g00443 Chy-Chr11:4340936 1.52E-160 dispersed
Chy11g00443 Chy-Chr11:4340936 Chy12g01058 Chy-Chr12:15728438 1.12E-121 dispersed
Chy11g00443 Chy-Chr11:4340936 Chy03g01513 Chy-Chr3:17447942 2.12E-172 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g447 Blo02g00819 . Bda06g01045 . . . . Bma12g00469 . . Cma02g00443 Cma20g00892 Car02g00300 Car20g00769 . . . . . . . . . . . . . . . . . Cone6ag0064 Cone9ag0078 Cone14ag1139 Cone15ag1157 Lsi10g00304 . Chy11g00443 . . . . . . . . . . Cmo02g00452 Cmo20g00899 . . . . . Cpe05g01219 . . . . . . . Cla09g01707 Cam09g1803 Cec09g1863 Cco09g1956 . . Cre01g0704 . Csa02g01195 . Cme11g00517
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000461 5 3 1 4 1 5 5 5 5 4 4 4 5 3 3 4 5 5 5 5 3 3 3 3 3 4 3 6 6 2 117
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00443 Chy_Chr11 FPKM 21.863729 20.868757 21.432556 24.057154 32.23513 29.298182 28.196106 30.639944 31.946358 29.1497