Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00445 ATGGCTTCCACTGAAATTGCCTACAACTTTTCCCCTATGCTCATCGTTTATAAAGACGGTCGCGCCGAAAGGCTCGTCGGCAACGAATTAGTGGATCCCTCTCTTGACCCTTTAACAGGCGTTGAGACCAAAGACATCGTTATCTCGCCGGAAACCCCCGTCTCTGCTCGGATTTACAGACCCAAACCCACCGCAGAACCTCACAAGTTTCCTCTTCTCATTTATTTTCACGGCGGCGGCTTCTGCATCGAATCAGCATTCTCTCCTACCTACCACCACCATCTCAACTCCTTAGTCGCTGAAGCCAACGTCATCGCTATCTCCGTCGAATACCGGCGAGCTCCGGAGCACCCACTTCCGATCGCTTATGAAGATTCCTGGACTGCTTTGAAATGGGTTGCCGCCCACTCGGCTGGAACCGGGCCAGAGGAGTGGTTGAATAAAATTGCAGATTTGAACCGGGTTTATTTCGCCGGAGATAGCGCTGGAGCCAACATCGCTAATAAAATGGCGATCCGGGTCGGAATCGAAAGGGCGGCCGGGTTGAATCTGAAGGGATTGATGTTGGTTCATCCTTATTTCTGGGGAGAGAAATTGATCGGAGATGAAGAGAAGCTGAAGCCGGAAGAAAGATGGTTTATTGAGAAATTGTGGTATGTGGCTTGTCCTACGATTAGCGGGTTAGATGACCCGATTGTGAACCCGGAATTTGAACCGAATTTGGGGCGGGTAACGGCGGAGAGAGTGGCGGTTTATGTGGCGGAGAAGGATTCTCTGAAAGACAGAGGACGGTTTTACAGTGAGTGTTTGAAGAAATCGGGATGGGGCGGCGCCGTCGAGGTGATGGAGACGAAAGGCCAAGGCCATGTGTTTCATTTGTTCAACCCTACGTCAGACGAGGCGGTTGATTTCGTCGGAAAGCTTGCGGCCTTCATCAAGGACGGACCCCGAGATTGA 957 51.41 MASTEIAYNFSPMLIVYKDGRAERLVGNELVDPSLDPLTGVETKDIVISPETPVSARIYRPKPTAEPHKFPLLIYFHGGGFCIESAFSPTYHHHLNSLVAEANVIAISVEYRRAPEHPLPIAYEDSWTALKWVAAHSAGTGPEEWLNKIADLNRVYFAGDSAGANIANKMAIRVGIERAAGLNLKGLMLVHPYFWGEKLIGDEEKLKPEERWFIEKLWYVACPTISGLDDPIVNPEFEPNLGRVTAERVAVYVAEKDSLKDRGRFYSECLKKSGWGGAVEVMETKGQGHVFHLFNPTSDEAVDFVGKLAAFIKDGPRD* 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4410525 4411481 + Chy11G190250.1 Chy11g00445 236206

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00445 318 Pfam alpha/beta hydrolase fold 73 292 IPR013094 GO:0016787
Chy11g00445 318 PANTHER CARBOXYLESTERASE 2-RELATED 3 313 - -
Chy11g00445 318 ProSitePatterns Lipolytic enzymes "G-D-X-G" family, putative serine active site. 155 167 IPR033140 -
Chy11g00445 318 PANTHER ARYLACETAMIDE DEACETYLASE 3 313 - -
Chy11g00445 318 SUPERFAMILY alpha/beta-Hydrolases 5 314 IPR029058 -
Chy11g00445 318 Gene3D alpha/beta hydrolase 8 315 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00445 - - - csv:101219532 620.928
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01517 Chy-Chr3:17482012 Chy11g00445 Chy-Chr11:4410525 7.81E-100 dispersed
Chy07g00118 Chy-Chr7:1025581 Chy11g00445 Chy-Chr11:4410525 1.44E-87 dispersed
Chy11g00445 Chy-Chr11:4410525 Chy05g00046 Chy-Chr5:310606 3.66E-46 dispersed
Chy11g00444 Chy-Chr11:4374742 Chy11g00445 Chy-Chr11:4410525 3.03E-85 tandem
Chy11g00445 Chy-Chr11:4410525 Chy11g00446 Chy-Chr11:4438312 1.65E-149 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g440 . . . Bda08g00850 . . . . . . Cma02g00445 Cma20g00895 . . . . . . . . . . . . . . . . . . . . . Cone3ag1108 . Lsi10g00295 . Chy11g00445 . . . . . . . . . . Cmo02g00454 Cmo20g00901 . . . . . . Bhi10g02089 Tan05g1411 . . Hepe08g1073 . . Cla09g01700 Cam09g1796 Cec09g1859 Cco09g1949 . . Cre01g0711 . . . Cme11g00519
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002370 4 3 1 1 2 2 0 2 2 2 2 2 3 2 2 4 2 2 3 2 2 4 3 1 1 2 1 2 2 1 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00445 Chy_Chr11 FPKM 0.262997 0.183574 0.729132 0.725296 0.593054 0.207572 0.930849 2.222842 2.549602 2.586452