Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00460 ATGGCTCCTCCCGCTAAGACCGTCTGCGTAATGGACGCTTCCTCCGGCGTTGGCTCTGCCCTCGTCGCTGCCCTCTTGCACAGAGGTTACACCGTTCACGCTTCCGTTCAGAATCACGATGATTTGCAGTGTGTTAAAGGAAATGCTAACAAATTGAAGGTTTTCCGTTCGGATCTGTTGGATTATCATAGTATTATGATCGCTCTTAAAGGATGCTCCGCTTTGTTCTATTCATTTCAACCTCCTCCGGATCATTCCACCTACGATGAATTAATGGTGGAAATTGAAGTGAGAGCAGCTCATAATGTTCTGGAAGCATGTGCCCAAACGGACACCATGGAGAAAGTTATTTTCACCTCTTCCATTACTGCCGTGATTTGGCGTGACGGTCTCAAAACGATGTCGTCCGATGTCGACGAGCGTCACTGGAGCGACGTTAACCTCTGCAAGAAGTTCAAACTGTGGCACGCTCTATCGAAAACCGTAGCCGAGAAAACAGCGTGGGCCCTGGCGATGGATCGTGGGGTTAATATGGTGTCCATAAATGGAGGGTTAGTGATGGGACACGATGTGACAATGAATAACCCGTATTTGAAAGGAGCTGCTGAGATGTACGAAGATGGGGTGTTGGTCACCGTTGATCTTAAATTCATAGTTGATGCTCATATATGTGTGTTTGAAGATGTGTCATCCTACGGTCGATATTTGTGCTTTAACAATATCATTAATTCTCATAAGGAAGCTCTTAGATTAGCCCATATGCTATTGCCTCCCTCTTCTGAAGCTTTCTCCCACTCCCCACCAAGTTTGGAAGACTCTGTTGTATATCAACAAGGAATAAGCAACAAGAAACTTAACAAATTGATGGTGGATTTTGAAAGTGGAGATTCATGTTGA 897 45.15 MAPPAKTVCVMDASSGVGSALVAALLHRGYTVHASVQNHDDLQCVKGNANKLKVFRSDLLDYHSIMIALKGCSALFYSFQPPPDHSTYDELMVEIEVRAAHNVLEACAQTDTMEKVIFTSSITAVIWRDGLKTMSSDVDERHWSDVNLCKKFKLWHALSKTVAEKTAWALAMDRGVNMVSINGGLVMGHDVTMNNPYLKGAAEMYEDGVLVTVDLKFIVDAHICVFEDVSSYGRYLCFNNIINSHKEALRLAHMLLPPSSEAFSHSPPSLEDSVVYQQGISNKKLNKLMVDFESGDSC* 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 4806322 4809465 + Chy11G190400.1 Chy11g00460 236221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00460 298 CDD FR_SDR_e 8 290 - -
Chy11g00460 298 Pfam NAD(P)H-binding 13 124 IPR016040 -
Chy11g00460 298 Gene3D - 2 298 - -
Chy11g00460 298 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 5 295 - -
Chy11g00460 298 PANTHER CINNAMOYL-COA REDUCTASE-LIKE SNL6 5 295 - -
Chy11g00460 298 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 286 IPR036291 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00460 - - - csv:101217768 596.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02156 Chy-Chr2:25803186 Chy11g00460 Chy-Chr11:4806322 1.47E-67 dispersed
Chy07g00120 Chy-Chr7:1034237 Chy11g00460 Chy-Chr11:4806322 1.36E-19 dispersed
Chy09g00340 Chy-Chr9:2975704 Chy11g00460 Chy-Chr11:4806322 5.54E-55 dispersed
Chy11g00460 Chy-Chr11:4806322 Chy12g00332 Chy-Chr12:3552674 2.40E-41 dispersed
Chy11g00460 Chy-Chr11:4806322 Chy04g01454 Chy-Chr4:21170796 2.38E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g393 . . . . . . . . . . . Cma20g00922 . Car20g00807 . . . . . . . . . . . . . . . . . . . Cone6ag1272 . . . Chy11g00460 . . . . . . . . . . . Cmo20g00929 . . . . . Cpe01g00435 Bhi10g02092 . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002312 4 3 3 3 3 2 2 2 2 1 2 2 2 1 1 1 2 3 2 2 1 2 1 2 2 2 2 1 3 2 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00460 Chy_Chr11 FPKM 56.828403 58.063156 96.618706 96.317513 47.05061 50.881397 43.151611 81.212479 83.989822 82.501923