Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00548 ATGGCGGTGGAGCTCCTCTCCGGCTTCACCAACGCTCCTCAACTCTCCTCCCGATCCCCTATGGACCAAGACTCCGCCGTTCAAGAAGCCGCCTCCGGTCTCGATACCCTCAAAAAGCTCATCACATTACTCTCTCATTCTCCCCCTTCTAATCTCGACTCCGATTGCCAAGCCGTCGCCAACGCCGCCGTCTCCCACTTCCGCAAGGCCATATCTCTCCTCGGCCGCTCCTCTAGAACCGGCCATGCCCGATTCCGCCGTGCCCCTTTAGATTCCTCTAAAATCTATAACGCTACCCCCATTCAACAAATCCCTCCCCCCTCCCTTGACCGCCTCGATTCCGCCACCACCATCAATTTCTCTTACTCTGCCGCTCCTACTTCCTCCTTCTTAACCTCCCTTCCTGCTTCCGATTCAGAAATTAAGCTCCAGCATCAACCCTCTTCCTCTTCTTTTCAGATTACTGATCTTTCCAGAGTTTCCTCTGTTGTCTCTAAGCCTTCTTCTGGTCTCAAGAGAAAGTGCGGTTCTGAGAATTTGGGTTCTGGGAAATGCGCTGGATCTTCTGGTGGTCGCTGCCACTGCTCTAAGAAAAGAAAATTGAGGTTGAAAAGGGTGGTGAGAGTACCAGCAATAAGTTCAAAGAACGCTGATATTCCTCCAGATGATTATTCGTGGAGGAAGTACGGGCAAAAGCCGATTAAGGGTTCTCCATATCCAAGAGGTTACTATAAGTGTAGCAGTTTACGAGGATGTCCGGCAAGAAAACACGTTGAGAGAGCGTCAGATGATCCATCTATGTTAATAGTAACGTACGAAGGCGATCATAATCACTCTCAATCAGTGGCAGAAGCTTCAAGTCTTATCCTTGAATCTTGGTGA 882 49.77 MAVELLSGFTNAPQLSSRSPMDQDSAVQEAASGLDTLKKLITLLSHSPPSNLDSDCQAVANAAVSHFRKAISLLGRSSRTGHARFRRAPLDSSKIYNATPIQQIPPPSLDRLDSATTINFSYSAAPTSSFLTSLPASDSEIKLQHQPSSSSFQITDLSRVSSVVSKPSSGLKRKCGSENLGSGKCAGSSGGRCHCSKKRKLRLKRVVRVPAISSKNADIPPDDYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERASDDPSMLIVTYEGDHNHSQSVAEASSLILESW* 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6055556 6056884 - Chy11G191280.1 Chy11g00548 236309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00548 293 Pfam WRKY DNA -binding domain 222 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy11g00548 293 ProSiteProfiles WRKY domain profile. 215 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy11g00548 293 SUPERFAMILY WRKY DNA-binding domain 216 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy11g00548 293 SMART WRKY_cls 220 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Chy11g00548 293 Pfam Plant zinc cluster domain 172 218 IPR018872 -
Chy11g00548 293 MobiDBLite consensus disorder prediction 9 29 - -
Chy11g00548 293 PANTHER WRKY TRANSCRIPTION FACTOR 7-RELATED 20 292 - -
Chy11g00548 293 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 20 292 IPR044810 GO:0003700
Chy11g00548 293 Gene3D WRKY domain 206 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
Chy11g00548 293 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02263 Chy-Chr2:26712048 Chy11g00548 Chy-Chr11:6055556 3.05E-63 dispersed
Chy04g00294 Chy-Chr4:2650264 Chy11g00548 Chy-Chr11:6055556 4.22E-71 dispersed
Chy05g00406 Chy-Chr5:4332849 Chy11g00548 Chy-Chr11:6055556 1.41E-51 dispersed
Chy07g00148 Chy-Chr7:1276049 Chy11g00548 Chy-Chr11:6055556 5.25E-15 dispersed
Chy10g00301 Chy-Chr10:7622199 Chy11g00548 Chy-Chr11:6055556 1.40E-21 dispersed
Chy11g00548 Chy-Chr11:6055556 Chy12g00450 Chy-Chr12:5585747 1.62E-29 dispersed
Chy11g00548 Chy-Chr11:6055556 Chy02g00896 Chy-Chr2:5782349 8.62E-109 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18688 PF03106 WRKY 2.60E-26 CL0274 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00548 - - csv:101209733 565.459