Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00558 ATGGGAACTCTCTCCTTCCCAATTCCCTCCTCAAAATTCCATCTTTTATCGAATCCCAACCCAGTTTCTCTTTTTACGCACCCTTTTCTTCAATCATCTTTCTCATCTTCTCCATTTCCCCCTCGTAATTTCCCTATTCTTCATTTACGGCGGCGTGTTCTCTGTTCCGCTGCGGCAGCTGGTCGGTCGAATCACGATGACGACCACCATGTTCATGATCACAACCATGGTCACCACCACCACCACCACCATGGTCACCACCACTGTGATCATGATGTTGAATTGTCTGGGCCTCAGAAAGCGGTGATTGAATTTGCTAAAGCCACTAGGTGGACGGACTTGGCTAACTATTTGAGGGAAAGCTTGCAATTATGTTGCTGCTCTATGGCTTTGTTTGTGGCTGCTGCTGTTTGCCCTTATTTGGTGCCCAAGCCCATTGTGAAGCCTTTGCAAATTGCTTTCATTGTCATTGGTTTTCCTTTAGTTGGGGTCTCCTCGGCACTTGACGCTTTAACTGATATTATTGGTGGAAAAGTGAACATCCATGTACTTATGGCCCTTGCAGCCTTTGCTTCCATCTTTATGGGAAATTCCTTGGAAGGAGGACTACTACTTGCCATGTTTAACTTGTCTCACATTGCCGAAGAGTATTTTACAAGTCGTGCGATGATTGATGTCAAAGAGTTGAAGGAAAACTATCCAGACTTTGCCCTTGTTTTAGATACAAATGATGGTGAAGTTCCAAATATTACAGATTTGTCCTACCAAAAGGTGCCTGTCCAAGATGTAGAAGTGGACTCCTATATATTAGTTGGAGCTGGTGAGTTTGTGCCTGTAGATTGTGAAGTTTTCCAAGGTAGTGCTACAGTCACCATTGAGCACCTAACCGGTGAAATCAAACCATTAGAGATTTTGGTTGGAAGCAGAGTTCCTGGTGGTGCAAGAAACTTAGATGGTAGGATAATCGTGAAGGCAACAAAGACCTGGAAAGAGTCAACTCTGAGTCGTATAGTGAACTTGACTGAAGAGGCACAACTAAATAAACCAAGACTTCAGAGGTGGCTCGATGAATTTGGTGAACATTATAGCAAAGCAGTTGTAGTATTGGCCACTGCTATTGCCCTCGTTGGTCCAATATTATTCAAGTGGCCATTTATTGGTACTTCAGCTTGTAGAGGATCGGTTTACAGAGCTCTAGGCCTCATGGTGGCAGCATCACCTTGTGCTTTGGCTGTTGCACCATTGGCTTATGCCATTGCAATAAGTTCCTGTGCAAGAAAGGGGATATTGTTGAAAGGTGGACGTGTATTAGATGCTTTAGCTGCTTGTCACACTATAGCATTTGATAAAACTGGGACGTTAACCACTGGAGGCCTTTTTTTCAAAGCGATTGAACCAATTTACGGACATGAGGTAGGAGAAAACAAACCAGAGTTTGGTTCATGTTGCATTCCCTGCTGTGAAGAAGAAGCTCTTGCTGTAGCAGCTGCAATGGAGAAGGGTACTACTCACCCCATTGGGAGAGCTGTGGTCGACCATAGTATGGGAAAAGACCTCCCTTCCTTTTCTGTGCAGAGTTTGGAATATTTTCCGGGTAGAGGACTTGTCGCAAATCTGCATGGTAGTGAGTCAGGTGGGAAACTATTGAAAGCATCTCTTGGTTCCTTAGATTTCATCACTTCATGCTACAAATCTGGAACCAAATCAAAAGAGATCAAAGAAGCTGCAAACACATCTTCATATGGACGTGCGTTTGTTCATGCTGCTCTTGCGGTTGATGGGAAGGTAACACTTATTCATCTTGAGGATCGACCTCATCCTGGAGTTTCAAGTGTAATATCTGAATTAACAGATAGAGCAAGACTTCATGTAATGATGTTGACTGGAGATCATGAGTCAAGTGCACGAAGAGTCGCAAATGCAGTAGGCATCAAGGAAGTCCACTTCAGTCTAAAGCCTGAAGATAAACTTAGTCACGTGAGAAGCATCTCTAGGAAGAATGGAGGAGGACTAATTATGGTTGGTGAAGGGATTAATGATGCACCAGCACTTGCTGCTGCTACCGTAGGCATAGTGCTTGCTCAACGTGCTAGTGCAACTGCTATAGCTGTGGCAGACGTTCTATTGCTGCGGGATAACATATCTGGTGTACCATTCTGTATTGCCAAGTCTCGCCAGACAACTGCTCTTGTTAAACAGAATGCTAGTCTTGCCTTGTTTTTTATATTTGTGGCTTCTTTTCCTGCTGTTTTAGGGTTTCTTCCCTTATGGTTAACGGTACTTCTACACGAAGGTGGTACGCTTCTAGTTTGTCTCAATTCCATACGCGCTCTGAATAATCCTAGTTGGTCCTGGGGGCAAGACTTGAAGCAATTGCTAATGGAGTTGAAATTTAAGGGCTCGCAGCCAAGGCTTGATACCAGCTCTACCACTGTACAATCTACCCCTGTATAG 2454 44.13 MGTLSFPIPSSKFHLLSNPNPVSLFTHPFLQSSFSSSPFPPRNFPILHLRRRVLCSAAAAGRSNHDDDHHVHDHNHGHHHHHHHGHHHCDHDVELSGPQKAVIEFAKATRWTDLANYLRESLQLCCCSMALFVAAAVCPYLVPKPIVKPLQIAFIVIGFPLVGVSSALDALTDIIGGKVNIHVLMALAAFASIFMGNSLEGGLLLAMFNLSHIAEEYFTSRAMIDVKELKENYPDFALVLDTNDGEVPNITDLSYQKVPVQDVEVDSYILVGAGEFVPVDCEVFQGSATVTIEHLTGEIKPLEILVGSRVPGGARNLDGRIIVKATKTWKESTLSRIVNLTEEAQLNKPRLQRWLDEFGEHYSKAVVVLATAIALVGPILFKWPFIGTSACRGSVYRALGLMVAASPCALAVAPLAYAIAISSCARKGILLKGGRVLDALAACHTIAFDKTGTLTTGGLFFKAIEPIYGHEVGENKPEFGSCCIPCCEEEALAVAAAMEKGTTHPIGRAVVDHSMGKDLPSFSVQSLEYFPGRGLVANLHGSESGGKLLKASLGSLDFITSCYKSGTKSKEIKEAANTSSYGRAFVHAALAVDGKVTLIHLEDRPHPGVSSVISELTDRARLHVMMLTGDHESSARRVANAVGIKEVHFSLKPEDKLSHVRSISRKNGGGLIMVGEGINDAPALAAATVGIVLAQRASATAIAVADVLLLRDNISGVPFCIAKSRQTTALVKQNASLALFFIFVASFPAVLGFLPLWLTVLLHEGGTLLVCLNSIRALNNPSWSWGQDLKQLLMELKFKGSQPRLDTSSTTVQSTPV* 818
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6278501 6289433 - Chy11G191380.1 Chy11g00558 236319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00558 817 PANTHER PROBABLE CADMIUM/ZINC-TRANSPORTING ATPASE HMA1 50 812 - -
Chy11g00558 817 Gene3D - 219 345 - -
Chy11g00558 817 SUPERFAMILY Calcium ATPase, transduction domain A 250 340 IPR008250 -
Chy11g00558 817 PRINTS P-type cation-transporting ATPase superfamily signature 447 461 - -
Chy11g00558 817 PRINTS P-type cation-transporting ATPase superfamily signature 698 710 - -
Chy11g00558 817 PRINTS P-type cation-transporting ATPase superfamily signature 620 630 - -
Chy11g00558 817 PRINTS P-type cation-transporting ATPase superfamily signature 674 693 - -
Chy11g00558 817 Gene3D - 458 605 IPR023299 GO:0000166
Chy11g00558 817 MobiDBLite consensus disorder prediction 65 92 - -
Chy11g00558 817 Pfam haloacid dehalogenase-like hydrolase 445 687 - -
Chy11g00558 817 SFLD Haloacid Dehalogenase 429 727 - -
Chy11g00558 817 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 254 469 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy11g00558 817 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 590 754 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Chy11g00558 817 ProSitePatterns E1-E2 ATPases phosphorylation site. 449 455 IPR018303 -
Chy11g00558 817 SUPERFAMILY HAD-like 445 774 IPR036412 -
Chy11g00558 817 CDD P-type_ATPase_HM 125 776 - -
Chy11g00558 817 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 181 776 IPR027256 GO:0006812|GO:0016021|GO:0019829
Chy11g00558 817 Pfam E1-E2 ATPase 251 427 - -
Chy11g00558 817 Gene3D - 440 725 IPR023214 -
Chy11g00558 817 SUPERFAMILY Calcium ATPase, transmembrane domain M 183 441 IPR023298 -
Chy11g00558 817 SFLD p-type atpase 429 727 IPR044492 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00225 Chy-Chr11:2099911 Chy11g00558 Chy-Chr11:6278501 8.65E-44 dispersed
Chy11g00510 Chy-Chr11:5556956 Chy11g00558 Chy-Chr11:6278501 0 dispersed
Chy11g00558 Chy-Chr11:6278501 Chy02g02243 Chy-Chr2:26524277 3.40E-58 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00558 K01534 - jre:109009121 1108.59