Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00586 ATGGACAACCCTCCACCAAACTGGAATTGGCTCTTCGATTACTCTACAGTGGATGATCTCGCCGTCGTCGACCCTCGATTCTCGCCCCCACAGTCCATCAGTTTCTCCTGGTCCAATCCCTCCATCAATTTTTCATCTAAAGACAGCCTTGACGTAGATTGTTCATATGAAGATCTGGACAGCACAAAGGAAGTGGGTCGGAAACGGCTAAGGGGTGAAACAAGTGCTGCATCTACCTCCAAAGCCTGCAGAGAGAAACAGAGGAGAGATAAGCTGAATGAGAGGTTCTTGGAATTGGCTGCTGTCCTGGAACCTGGAAAACCACCCAAAAGCGACAAGGTTGCAATCTTGAGTGATGCTATCAGAATGATGACTGATTTACAATGTGAAACTCAGAAGCTGAGAGAATCAAAGGAGGATTTGAAGGCAAAAATCAAAGAACTAAAGGTTGAGAAAAATGAACTTCGTGATGAGAAGCAAAGGTTGAGAGCAGAGAAAGAAAAGTTGGAGCTGCAAATCAGAGCAGTGAACACTCGAACAGCTGATGTTCAGCATCCTCCCCCTACACTGTCAGCTGCATATACAGCACAAGGGCAATCGGCTGGTAACAAATTGATGCCTTTCATTGGTTATCCTGGCATTGCCATGTGGCAGTTCTTGCCGCCTGCAGCTGTCGACATATCACAGGATCATGTGCTTCGCCCACCGGTTGCTTAA 717 46.86 MDNPPPNWNWLFDYSTVDDLAVVDPRFSPPQSISFSWSNPSINFSSKDSLDVDCSYEDLDSTKEVGRKRLRGETSAASTSKACREKQRRDKLNERFLELAAVLEPGKPPKSDKVAILSDAIRMMTDLQCETQKLRESKEDLKAKIKELKVEKNELRDEKQRLRAEKEKLELQIRAVNTRTADVQHPPPTLSAAYTAQGQSAGNKLMPFIGYPGIAMWQFLPPAAVDISQDHVLRPPVA* 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6690012 6692956 + Chy11G191660.1 Chy11g00586 236347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00586 238 MobiDBLite consensus disorder prediction 65 88 - -
Chy11g00586 238 PANTHER BHLH TRANSCRIPTION FACTOR 5 238 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Chy11g00586 238 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 76 127 IPR011598 GO:0046983
Chy11g00586 238 Pfam Helix-loop-helix DNA-binding domain 79 128 IPR011598 GO:0046983
Chy11g00586 238 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 81 152 IPR036638 GO:0046983
Chy11g00586 238 CDD bHLH_AtILR3_like 81 156 - -
Chy11g00586 238 Gene3D arf6 gtpase in complex with a specific effector, jip4 126 180 - -
Chy11g00586 238 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 5 238 - -
Chy11g00586 238 SMART finulus 82 133 IPR011598 GO:0046983
Chy11g00586 238 Coils Coil 124 179 - -
Chy11g00586 238 Gene3D - 68 125 IPR036638 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01011 Chy-Chr4:14888996 Chy11g00586 Chy-Chr11:6690012 3.13E-88 dispersed
Chy04g01015 Chy-Chr4:14961646 Chy11g00586 Chy-Chr11:6690012 5.83E-89 dispersed
Chy06g00483 Chy-Chr6:3237018 Chy11g00586 Chy-Chr11:6690012 1.05E-43 dispersed
Chy11g00295 Chy-Chr11:2718166 Chy11g00586 Chy-Chr11:6690012 1.34E-13 dispersed
Chy11g00586 Chy-Chr11:6690012 Chy12g01019 Chy-Chr12:15419503 1.35E-69 dispersed
Chy11g00586 Chy-Chr11:6690012 Chy02g00573 Chy-Chr2:3449042 2.40E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18690 PF00010 HLH 8.50E-10 No_clan Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00586 - - csv:101212433 473.011