Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00597 ATGCAATATAATTGGTTTGTGACATCCAATGTAGTTGTTAGTGTTACGGATTCATTTGTTAGCAATGCCAAAGGTGAGTCTTTTAGAGAAATTGATCTCGAGAAGGGAACTCGAGTTCTGCGAAGCAATTCTGACATGGGAATGGAGGCCTTCAATAAGCAGATACAAGACGTTGAGGTTCAAGTAGATAAGCTCGCTGGGCTTCTTATTAAACTGAAGGAAGCTAATGAAGAATCGAAGTCTGTTACAAAAGCATCAGAGATGAAAGCTATCAAAAAGCGAATGGAAAAGGATATTGATGAAGTTGGAAAAATAGCGCGCAATGTCAAGGGGAAGCTGGAGGCTGTAAATAAAGATAACTTGACCAATAGGCAGAGGCCTGGGTTCGAGAAGGGAACGGCCATTGACCGAGCAAGAATGAACGTGACAAATGCGTTGACAAAAAAGTTCAAGGATCTGATGATAGAATTTCAGACTCTTCGTCAAAGAATTCAAGCTGAGTACCGTGAAGTCGTGGAAAGACGAGTGATTACAGTTACGGGTACCAGACCAGATGAGACGACTATTGATCACCTTATAGAAACTGGAAACAGTGAGCAAATATTCAAGAATGCATTTGAACAAATGGGACGAGGACAGGTTATCAGTACTGTGGAAGAAATTCAAGAGCGACACGATGCAGTTAAAGAGATCGAGAAAAAGCTCTCGGAATTGCATCAGATTTACCTTGACATGGCAGTTTTAGTGGAAGCCCAGAGTGAAATTTTGGATAACATAGAAAATCAGGTAACGAACGCAGTCGATCACGTTCGAACGGGAACGGATGCACTCCAAACCGCAAAGAGCTTACAGAAGAGATCAAGAAAATGCATGATGATTGGCATCATATTGCTGCTGGAACCGTTCATCGTCCGTGATGCCGAAGGTCAGGCTTCCGAAGAAACAGATCTTGAGAAGGGAACTCAAGTTCTTCAGAGCAATTCTGACTTTGGAATGGATGTGTTCAATAAGCAGATTCAAGAGGCTGAGATACAAGTGGATAAGCTCTCTGGACTTCTTATTGACTTGAAGACTTTATTGAAAGATGCTAATGAGGAATCGAAATCTGCCACAAACACATCGGAGATAAAAGCTTTTAAGAATCGGATCGAAAAGTATATCGATGATGTGGGAAAGAATACGGGTGAAGTTAGAGGGAAGCTACAAGTTATAACCATAGATAACGTATTCCATAGGCAGATGCCTGGGTGTGAGAAGGGAACTGCCTGTGACAGAGAAAGAATGAATTGTACAAATGTGTTGACTAAAAAGCTCAAGGAACTGTTGACTGAATTTGAGGCCCTTCATCGAACAATTCAGGATGAGTATCGTGAAGTTGTGGAAAGACAAGTGAATACAGTTACAGATACAAGATCAGATGGGATGATCATTGATCACCTTCTAGAAACTGGAAGCAGCAAGAAAATATTCCCCACTACATTTGAACAAACTGAAGGTGGAAAGGTCATAGGAATTATGGAAGAAAAGATTCAAGAGCGATTTAATGCCATTAAAGAATTTGATAAAAGATTCTTAGACCTGTATCAGCTTTACGTGAAAACGGCCGTTTTAGTAGAGGGTCATGCCAAGGTTTTGGATAACATGGAAAATAAGGTGAAGGATGCAGTTGATCGCATCGAAAAAATCGATAAGAACCAGAAGGAACAGAAACTCGAGAATATGTCAGGAAAGAACATGACGAACTACTACTTATGCTTTATGGTGGTTATTATAATCATTAACATTCTCTCAGCTTCAGCTTCAAAGTAA 1809 40.41 MQYNWFVTSNVVVSVTDSFVSNAKGESFREIDLEKGTRVLRSNSDMGMEAFNKQIQDVEVQVDKLAGLLIKLKEANEESKSVTKASEMKAIKKRMEKDIDEVGKIARNVKGKLEAVNKDNLTNRQRPGFEKGTAIDRARMNVTNALTKKFKDLMIEFQTLRQRIQAEYREVVERRVITVTGTRPDETTIDHLIETGNSEQIFKNAFEQMGRGQVISTVEEIQERHDAVKEIEKKLSELHQIYLDMAVLVEAQSEILDNIENQVTNAVDHVRTGTDALQTAKSLQKRSRKCMMIGIILLLEPFIVRDAEGQASEETDLEKGTQVLQSNSDFGMDVFNKQIQEAEIQVDKLSGLLIDLKTLLKDANEESKSATNTSEIKAFKNRIEKYIDDVGKNTGEVRGKLQVITIDNVFHRQMPGCEKGTACDRERMNCTNVLTKKLKELLTEFEALHRTIQDEYREVVERQVNTVTDTRSDGMIIDHLLETGSSKKIFPTTFEQTEGGKVIGIMEEKIQERFNAIKEFDKRFLDLYQLYVKTAVLVEGHAKVLDNMENKVKDAVDRIEKIDKNQKEQKLENMSGKNMTNYYLCFMVVIIIINILSASASK* 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6820796 6846429 - Chy11G191770.1 Chy11g00597 236358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00597 602 SMART SynN_4 327 457 IPR006011 GO:0016020
Chy11g00597 602 SMART SynN_4 43 169 IPR006011 GO:0016020
Chy11g00597 602 Pfam Syntaxin 51 252 IPR006011 GO:0016020
Chy11g00597 602 Pfam Syntaxin 336 539 IPR006011 GO:0016020
Chy11g00597 602 Gene3D - 332 464 - -
Chy11g00597 602 SUPERFAMILY t-snare proteins 330 561 IPR010989 GO:0016020|GO:0016192
Chy11g00597 602 Gene3D - 505 599 - -
Chy11g00597 602 Gene3D - 209 305 - -
Chy11g00597 602 Coils Coil 438 458 - -
Chy11g00597 602 Coils Coil 48 78 - -
Chy11g00597 602 Coils Coil 545 565 - -
Chy11g00597 602 Coils Coil 332 373 - -
Chy11g00597 602 SUPERFAMILY t-snare proteins 45 273 IPR010989 GO:0016020|GO:0016192
Chy11g00597 602 CDD SynN 48 205 IPR006011 GO:0016020
Chy11g00597 602 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 218 280 IPR000727 -
Chy11g00597 602 PANTHER SYNTAXIN 17 299 IPR045242 -
Chy11g00597 602 SMART tSNARE_6 213 280 IPR000727 -
Chy11g00597 602 SMART tSNARE_6 501 569 IPR000727 -
Chy11g00597 602 PANTHER SYNTAXIN 303 596 IPR045242 -
Chy11g00597 602 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 507 569 IPR000727 -
Chy11g00597 602 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 303 596 - -
Chy11g00597 602 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 17 299 - -
Chy11g00597 602 CDD SNARE_syntaxin1-like 217 279 - -
Chy11g00597 602 Pfam SNARE domain 254 299 IPR000727 -
Chy11g00597 602 Gene3D - 43 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g01397 Chy-Chr4:20568837 Chy11g00597 Chy-Chr11:6820796 1.01E-54 dispersed
Chy11g00597 Chy-Chr11:6820796 Chy12g00974 Chy-Chr12:15035977 2.76E-32 dispersed
Chy11g00597 Chy-Chr11:6820796 Chy04g01850 Chy-Chr4:24681494 1.55E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00597 K08486 - csv:101214355 533.487