Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00602 ATGAAGGTGTTTTGGATTAGGAGTGGTCATTTAGTCAAAACAAGAGTTATGCTATTTGCATTGTTGTTTGGGATTTGGATGCCCTTGGGAGTCATTGGTGTCTCTAAAAACATTACCACTTCTTCAAATCCAAGGGTGTTGAATGTTGGAGTTCTCTTCACTTTTGATTCGGTTATTGGAAGGTCTGCACAGCCAGCGATTTTAGCTGCCATGGACGACGTCAATGCCGATAACGACACTCTTCAAGGAACAAAGCTAAAGCTGATCCTACATGACACGAACTGCAGCGGATTTCTTGGAACTGTGGAAGCCTTGCAGTTGATGCAGGATGAAGTGGTTGCTGCTATTGGGCCACAATCTTCGGGCATCGCTCACGTCATTTCCCATGTTATTAATGAACTCCATATACCACTTCTATCATTTGGAGCTACTGATCCTGCTTTATCTGCACAGGAATACCAATATTTCGTTCGAACCACACAGAGTGATTACTTCCAGATGAATGCAATTGCTGATATAGTAGATTATTTTGGATGGAGAGAGGTTGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGTGGGATATCAGCATTGAGCGATGCCTTGGCGAAGAAGCGAGCCAAAATCTCATATAGGGCTGCTTTTCCTCCTGGATCCCCCAGTAGCGCAATAAGTGACTTGTTGGTTTCGATCAACCTGATGGAATCTCGAGTTTATGTTGTACACGTCAACCCTGACACTGGTTTATCAGTATTTTCAATAGCTAAGAAACTTCAGATGTTAGGTAGTGGCTATGTTTGGATCACAACAGATTGGCTTCCTTCTTTTCTTGATTCTATTGAAACAAATAGTCCTGATGTAATGAATCAGCTACAAGGTGTTGTTGCTCTTCGTCACCACACCCCTGATGGCAATCTGAAGAAAAACTTTATCTCCAAGTGGAAGAATCTAAAATTCAAGAAGAGTCCAAACTTTAACTCTTATGCACTCTATGCATACGACTCTGTTTGGTTAGCAGCTCGTGCTCTCGACACATTCATTAAAGAAGGTGGAAACATATCCTTTTCCAACGACCCGAAGTTACGTGAAACTAATGGAAGCATGCTGCACTTAAAATCCCTCCGTGTGTTTAATGGCGGTGAACAACTTTTACAAACAATTAAGAGAACGAACTTCACAGGTGTAAGTGGGCGAATTCAATTTGGTGATGATAGAAATTTGATTAATCCAACTTATGATATCCTCAACATTGGGGGAACTGGTTCACGTAGAATTGGTTACTGGTCAAATAATTCTGGTCTATCAACTATTGCACCAGAAAACTTGTATACCAAGCCTCTTAATGCTTCCCCAAATAACCATCTCTATAGTGTCATATGGCCCGGTGAAATAACGACCGTTCCTCGAGGATGGGTGTTTCCACACAATGGGAAACCATTACAAATTGTAGTACCTAACCGAGTGAGTTACAAAGCTTTTGTGGCTAAAGATAACAACCCTCTAGGTGTTAAAGGATATTGTATAGATGTGTTTGAAGCTGCCATAAACTTGTTGTCTTATCCAGTTCCGCACACATATATATTATATGGAGATGGAAAGGACACTCCTGAGTATAGCGATCTTGTATATGAAGTTTCACAAAATAAATATGATGCAGCTGTTGGAGATATTACTATTGTAACAAATAGGACGAAGATTGTAGACTTTACACAACCATTTATGGAGTCGGGACTTGTTGTAGTTACTGTCGTCAAAGGGGAGAAGTCTAGTCCATGGGCTTTTCTTAGGCCATTTACTATTCAAATGTGGGCTGTCACTGCTTTATTCTTTATTTTTGTTGGGGCCGTTGTCTGGATTCTTGAGCATCGGACTAATGAAGAGTTTCGTGGTCCACCGAGGCAACAACTAATTACAATATTTTGGTTTAGTTTCTCGACGATGTTCTTTTCTCATAAGGAAAACACTGTAAGCACCCTCGGAAGGTTGGTGCTGATAATATGGCTTTTTGTTGTGTTAATTATCAACTCGAGCTACACGGCTAGTTTGACGTCGATTTTAACGGTGCAACAACTAACGTCGAAGATTGAAGGGATTGATAGCTTAATCTCTAGCACAGATGCCATTGGAGTTCAGGAAGGGTCATTTGCATTGAATTATTTGATTGATGAACTGAATATAGTAGCATCTAGGATCATTAAACTGAAAAATCAGGATGAGTATGATGATGCTCTTCGGCGTGGACCACGAAATGGTGGGGTCGCTGCCATTGTTGACGAGCTTCCTTATGTTGAACTTTTTTTGTCTGGTACCAATTGCGTATTCAAGACAGTTGGACAAGAGTTTACGAAAAGCGGATGGGGATTTGCGTTCCAAAGGGACTCTCCTCTTGCAGTTGATTTATCAACAGCCATTCTTCAACTCTCGGAGAATGGTGATCTTCAAAAGATCCATGACAAATGGCTCTCACGAACTGAGTGTTCCCTGGGTTTGAACCAAGCCGACTTAAACCAACTATCATTGAGTAGCTTTTGGGGATTGTTCTTAATTTGTGGCATTTCCTGCTTTATCGCTCTTTCGATATTCTTCTTTCGAGTACTATTCCAATACCGAAGATTTACCCCGGAAACTCAGCCTGAAGTCGAGCAAATTGAACCTGTTAGGACGAGACGCCTTAGTCGTACAACCAGCTTCATGCTTTTTGTAGATAAAAAAGAAGCAGAAGTCAAAGACAAGCTTAAAAGAAAATCAAATGATAACAAACAAGCTAGCCAAAGTACAGAGGGCCACTCTGATTCACCTCCATGA 2808 40.99 MKVFWIRSGHLVKTRVMLFALLFGIWMPLGVIGVSKNITTSSNPRVLNVGVLFTFDSVIGRSAQPAILAAMDDVNADNDTLQGTKLKLILHDTNCSGFLGTVEALQLMQDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPALSAQEYQYFVRTTQSDYFQMNAIADIVDYFGWREVVAIFVDDDNGRSGISALSDALAKKRAKISYRAAFPPGSPSSAISDLLVSINLMESRVYVVHVNPDTGLSVFSIAKKLQMLGSGYVWITTDWLPSFLDSIETNSPDVMNQLQGVVALRHHTPDGNLKKNFISKWKNLKFKKSPNFNSYALYAYDSVWLAARALDTFIKEGGNISFSNDPKLRETNGSMLHLKSLRVFNGGEQLLQTIKRTNFTGVSGRIQFGDDRNLINPTYDILNIGGTGSRRIGYWSNNSGLSTIAPENLYTKPLNASPNNHLYSVIWPGEITTVPRGWVFPHNGKPLQIVVPNRVSYKAFVAKDNNPLGVKGYCIDVFEAAINLLSYPVPHTYILYGDGKDTPEYSDLVYEVSQNKYDAAVGDITIVTNRTKIVDFTQPFMESGLVVVTVVKGEKSSPWAFLRPFTIQMWAVTALFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIEGIDSLISSTDAIGVQEGSFALNYLIDELNIVASRIIKLKNQDEYDDALRRGPRNGGVAAIVDELPYVELFLSGTNCVFKTVGQEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSLGLNQADLNQLSLSSFWGLFLICGISCFIALSIFFFRVLFQYRRFTPETQPEVEQIEPVRTRRLSRTTSFMLFVDKKEAEVKDKLKRKSNDNKQASQSTEGHSDSPP* 936
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 6997659 7004227 - Chy11G191820.1 Chy11g00602 236363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00602 935 Gene3D - 66 410 - -
Chy11g00602 935 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 38 916 - -
Chy11g00602 935 SUPERFAMILY Periplasmic binding protein-like I 41 473 IPR028082 -
Chy11g00602 935 Gene3D - 475 590 - -
Chy11g00602 935 SMART GluR_14 482 824 IPR001320 GO:0015276|GO:0016020
Chy11g00602 935 Pfam Receptor family ligand binding region 64 419 IPR001828 -
Chy11g00602 935 CDD PBP1_GABAb_receptor_plant 48 436 IPR044440 -
Chy11g00602 935 Gene3D - 591 719 - -
Chy11g00602 935 Gene3D - 720 826 - -
Chy11g00602 935 PANTHER GLUTAMATE RECEPTOR 3.4 38 916 - -
Chy11g00602 935 Gene3D - 162 435 - -
Chy11g00602 935 MobiDBLite consensus disorder prediction 911 935 - -
Chy11g00602 935 SUPERFAMILY Periplasmic binding protein-like II 457 823 - -
Chy11g00602 935 Pfam Bacterial extracellular solute-binding proteins, family 3 494 823 IPR001638 -
Chy11g00602 935 PIRSF IGluLR_plant 13 934 IPR017103 -
Chy11g00602 935 Pfam Ligand-gated ion channel 824 854 IPR001320 GO:0015276|GO:0016020
Chy11g00602 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 60 76 - -
Chy11g00602 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 251 274 - -
Chy11g00602 935 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 120 148 - -
Chy11g00602 935 CDD GluR_Plant 479 822 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00503 Chy-Chr2:3072710 Chy11g00602 Chy-Chr11:6997659 0 dispersed
Chy07g00408 Chy-Chr7:3234623 Chy11g00602 Chy-Chr11:6997659 0 dispersed
Chy11g00602 Chy-Chr11:6997659 Chy11g00606 Chy-Chr11:7129683 0 dispersed
Chy11g00602 Chy-Chr11:6997659 Chy11g00605 Chy-Chr11:7097027 0 proximal
Chy01g00422 Chy-Chr1:2975575 Chy11g00602 Chy-Chr11:6997659 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00602 K05387 - csv:101215485 1837.39