Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00605 ATGAAGGTGCTTTGGATTAGGAGGAGTGGCCATTTAGTCAAAACAAGAGTGATGCTATTTGCATTGTTGTTTGGGATTTGGATGCCTTTGGGAGTCATTGGTGTCTCTAAAAACATTACTATTTCTTCTTCAAATCAAAGGGTGTTGAATGTTGGAGTTCTCTTCACTTTCGATTCGGTTATTGGACGGTCTGCAAAGCCTGCTATTTTAGCTGCTGTGGACGACGTTAATGCCGATAACGACATTCTTCCCAAAATGAAGCTGAACTTGGTCCTACACGACACGAACTGCAGCGGATTCTTTGGAACTATGGAAGCCTTGCAGTTGATGGAAGATGAAGTGGTTGCTGCTATTGGGCCACAATCTTCCGGCATCGCTCACGTCATTTCCCATGTTATTAATGAACTCCATATTCCACTTCTATCATTTGGAGCTACGGATCCTGCTTTGTCTGCACAACAATACCAGTATTTCGTTCGAACCACACAGAGTGATTACTTCCAGATGAATGCAATTGCTGATATGGTTGCGAAGTTTGGATGGAAAGAGGTTGTTGCCATTTTTGTAGATGATGATAATGGCAGGAGTGGGATATCGGCATTGAGCGATGCCTTGGCGAAGAAGCGAGCCAAGATCGCTTATAAGGCTGCCTTCCCTTCTGGATGCTCCATTAGCACAATAAGTGACTTGTTGGTTTCCGTAAACATGATGGAATCTCGGGTTTACGTTGTACACGTCAATCCCGACACAGGTTTATCAGTATTTTCAGTAGCTAAGAAACTTCAAATGATGGGTAGTGGTTATGTCTGGATTGCAACAGATTGGCTTCCTTCTTTTCTTGATTCGTTTGAAACAAATAGTCCTGATGTAATGAATCAGCTACAAGGTGTAGTTGCTCTTCGTCACCACACCCCCGATGGCAATCTGAAGAAAAACTTTATCTCCAAGTGGAGGAATCTAAAATACAAAAAGAGTCAAAACTTCAACTCTTATGCACTCTATGCATACGACTCTGTTTGGTTAGTAGCCCGTGCTCTCGACACGTTTTTTAAAGAAGGTGGAAATATATCTTTTTCCAACGACCCAAGATTGCGTGAAAACAATGGGAGCATGTTTTACTTAAAATCATTCAAAGTGTTTAACGGTGGCGAACAACTTCTACAAACAATTAAGAGAACCAGCTTCACAGGGGTAAGTGGTCAAATTCAATTTGGTGATGGTAAACATTTGATTCATCCAGCTTATGATATCTTGAACATTGGGGGAACTGGTATACGTAGAATTGGTTACTGGTCAAATTATTCTGGTCTATCAACTATAGCACCTGAAAACTTGTATGTCAAACCACTTGATGCTTCCCCAAATAACAATCTCTACAGTGTCATATGGCCGGGTGAAACAACGACCATTCCTCGAGGATGGGTATTTCCACACAGTGGGAAACCATTACAAATTGTTGTACCTAACCGAGTGAGTTACAAAGCCTTCGTGTCTAAAGACAAGAACCATCCAGGTGTTAAAGGATATTGTATAGATGTGTTTGAAGCTGCCATAAACTTGTTGCCTTACCCAGTTCCTCACATATATATATTATATGGAGATGGAAAGGACACTCCTGAGTATAGCAATCTTGTATATGAGGTTTCACAGAATAAATATGATGCAGTTGTTGGAGATATTACGATTGTAACGAATAGGACGAAGATTGTAGACTTCACTCAACCGTTTATGGAGTCGGGACTTGTTGTAGTTACTGTCGTCAATGAGGAGAAGTCAAGTCCATGGGCCTTTCTCAGGCCGTTTACCATTCAAATGTGGGCTGTCACTGCAATATTCTTTATTTTTGTTGGAGCAGTTGTTTGGATTCTCGAGCATCGGACTAATGAAGAGTTTCGTGGTCCACCAAGGCAACAACTAATTACAATATTTTGGTTTAGTTTCTCGACGATGTTCTTTTCTCACAAGGAAAACACTGTAAGCACCCTCGGACGGTTGGTGCTGATAATATGGCTCTTTGTGGTGTTAATTATCAACTCAAGCTACACAGCTAGTTTGACGTCGATCTTAACAGTTCAACAACTAACGTCAAAGATTAAAGGGATCGATAGCTTAATCTCTAGAACCGATGCCATTGGAGTTCAAGAAGGGTCATTTGCATTGCATTACTTGATTGATGACCTAGGTGTAGCAGCATCTAGAATCATTAAACTAAAAGATCAGGAGGAATATGCCGACGCTCTTCGGCGTGGACCCGAAAATGGTGGGGTCGCTGCCATTGTTGACGAGCTTCCTTACGTTGAGCTTTTTTTGGCTGGAACCAATTGCATGTACAGGATAGTTGGAGAGGAGTTCACGAAAAGCGGATGGGGATTTGCATTCCAAAGGGACTCTCCTCTCGCAGTTGATTTATCTACAGCGATTCTTCAACTCTCAGAGAATGGTGATCTCCAAAAGATCCATGATAAATGGCTATCACGAACCGAATGTTCGACGGACCTGAACCAAGTCGATGTAAACCAGCTATCACTGAGTAGCTTTTGGGGATTGTTCTTAATTTGTGGCATTGCCTGTTTTGTAGCTCTTTCGGTATTCTTCTTTCGAGTACTATTCCAATACCGAAGATTTACCCCAGAAACCCAGTCTGAAGTGGAGGAGATTGAACCTGTTAGGACGAGACGTCTTAGCCGTACAACTAGCTTCATGCACTTTGTAGATAAAAAAGAAGCAGAAGTTAAACCCAAACTTAAAAGAAGCAGTGATAACAAACAAGTTAGCCAGAGCTCAGAGAGCCTTCCTGCTTCACCTCCTTGA 2811 41.84 MKVLWIRRSGHLVKTRVMLFALLFGIWMPLGVIGVSKNITISSSNQRVLNVGVLFTFDSVIGRSAKPAILAAVDDVNADNDILPKMKLNLVLHDTNCSGFFGTMEALQLMEDEVVAAIGPQSSGIAHVISHVINELHIPLLSFGATDPALSAQQYQYFVRTTQSDYFQMNAIADMVAKFGWKEVVAIFVDDDNGRSGISALSDALAKKRAKIAYKAAFPSGCSISTISDLLVSVNMMESRVYVVHVNPDTGLSVFSVAKKLQMMGSGYVWIATDWLPSFLDSFETNSPDVMNQLQGVVALRHHTPDGNLKKNFISKWRNLKYKKSQNFNSYALYAYDSVWLVARALDTFFKEGGNISFSNDPRLRENNGSMFYLKSFKVFNGGEQLLQTIKRTSFTGVSGQIQFGDGKHLIHPAYDILNIGGTGIRRIGYWSNYSGLSTIAPENLYVKPLDASPNNNLYSVIWPGETTTIPRGWVFPHSGKPLQIVVPNRVSYKAFVSKDKNHPGVKGYCIDVFEAAINLLPYPVPHIYILYGDGKDTPEYSNLVYEVSQNKYDAVVGDITIVTNRTKIVDFTQPFMESGLVVVTVVNEEKSSPWAFLRPFTIQMWAVTAIFFIFVGAVVWILEHRTNEEFRGPPRQQLITIFWFSFSTMFFSHKENTVSTLGRLVLIIWLFVVLIINSSYTASLTSILTVQQLTSKIKGIDSLISRTDAIGVQEGSFALHYLIDDLGVAASRIIKLKDQEEYADALRRGPENGGVAAIVDELPYVELFLAGTNCMYRIVGEEFTKSGWGFAFQRDSPLAVDLSTAILQLSENGDLQKIHDKWLSRTECSTDLNQVDVNQLSLSSFWGLFLICGIACFVALSVFFFRVLFQYRRFTPETQSEVEEIEPVRTRRLSRTTSFMHFVDKKEAEVKPKLKRSSDNKQVSQSSESLPASPP* 937
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7097027 7101228 - Chy11G191850.1 Chy11g00605 236366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00605 936 Pfam Bacterial extracellular solute-binding proteins, family 3 492 825 IPR001638 -
Chy11g00605 936 Gene3D - 164 437 - -
Chy11g00605 936 PIRSF IGluLR_plant 13 934 IPR017103 -
Chy11g00605 936 Pfam Receptor family ligand binding region 66 421 IPR001828 -
Chy11g00605 936 Gene3D - 68 412 - -
Chy11g00605 936 CDD GluR_Plant 481 824 - -
Chy11g00605 936 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 253 276 - -
Chy11g00605 936 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 62 78 - -
Chy11g00605 936 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 122 150 - -
Chy11g00605 936 SUPERFAMILY Periplasmic binding protein-like I 44 475 IPR028082 -
Chy11g00605 936 PANTHER GLUTAMATE RECEPTOR 3.4 33 918 - -
Chy11g00605 936 SMART GluR_14 484 826 IPR001320 GO:0015276|GO:0016020
Chy11g00605 936 MobiDBLite consensus disorder prediction 910 936 - -
Chy11g00605 936 Gene3D - 721 828 - -
Chy11g00605 936 MobiDBLite consensus disorder prediction 920 936 - -
Chy11g00605 936 Gene3D - 593 720 - -
Chy11g00605 936 SUPERFAMILY Periplasmic binding protein-like II 459 825 - -
Chy11g00605 936 CDD PBP1_GABAb_receptor_plant 50 438 IPR044440 -
Chy11g00605 936 Pfam Ligand-gated ion channel 826 857 IPR001320 GO:0015276|GO:0016020
Chy11g00605 936 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 33 918 - -
Chy11g00605 936 Gene3D - 478 592 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy11g00605 Chy-Chr11:7097027 Chy03g01064 Chy-Chr3:14069020 6.35E-161 dispersed
Chy11g00602 Chy-Chr11:6997659 Chy11g00605 Chy-Chr11:7097027 0 proximal
Chy11g00605 Chy-Chr11:7097027 Chy11g00606 Chy-Chr11:7129683 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00605 K05387 - csv:101207545 1812.73