Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00606 ATGGAGAGCTTATTCGTTCTTACATTGCTTAGTTCGATATGGGCATTTCTTACTGGTTCTGCATGCTGCCAAAGGCCTGCAGTTGTGAACATTGGTGCAGTTTTCACTTTTGATTCAATTATAGGAAGAGCGGCAAAGGTGGCAATGGAAGCTGCAGTCTCGGATGTGAATGCAGATCCTTCTATTCTCAATGGAACAAAGCTGAATTTGGTCATGGCAGATACACATTGTAATGTTCTCTTGGGTTCTATTGGAGCTTTCCAGGTTCTTGAGAAAGATGTTGTAGCCATAGTTGGGCCTCAATCTTCAGTTGTAGCTCATATGGTTCTACAGATTGCTAATAATCTTCAAGTCCCTCTTATATCATACGCTGCCACTGACCCAACTTTATCTGCTCTCCAATTCCCCTTTTTCCTACGGACTACTCAGAGTGATGCCTATCAAATGACTGCTATGGCAGACTTAATTGACTTTTATGAGTGGAAAGAGGTGATCATGATCTTTGTGGATGATGATTATGGTAGAAATGGAATATCCACTTTAACTGATGAGCTTGACAAGAGGATGTTTAAAATTTCTTACAAAATACCCTTACCTTCTCATTGTAATCTCAGTGAAATCACAGCCATACTCAATAAATCCAAGTTGCTTGGTCCTCGTGTTTATGTTGTTCACGTCAATCCTGATCCTAGATTAAGTATCTTCAAAATAGCCCATCAACTTGATATGATGACAAGTGATTATGTGTGGCTGGCAACCGATTGGCTTTCTACTACCTTGGATTCTGTTCTGCTCGTGCAACAAACCTCTATAAACATCCTTCAAGGCGTGGTTGTACTTCGTCAACATATTCCTGAATCCAGCCAAAAAATAACATTGTGGTCTCGGTTAAGGAAGATGCTGCCAGAAGACTCCAGAAACTCTTCATTGAATGTATATGCTCTTAGTGCCTATGATACCATTCAAGTAGTTGCACGTGCAATTGATAAGTTTCTGAATGAAGGTAGGAGCATTACCTTCTCATTGAAGAACAAGTTTCATGATTTAAATACATCTAGAATGCCCTGGGGAAAGCTCAAAATATTTGATGATGGTGCTCTTCTTTTGAGCATATTGTTGCAGGCAAACTTTACTGGTTTAAGTGGTCAGATTGAGTTTAACTCAGATCGGAACATTGTCACTAGAGGCTATGATGTGATCAATATTGATCAGACGGGACTGCGTAGAGTTGGTTATTGGTCCAATGTCACAGGCTTTACAATCCAATCCCCAGAAACTCTGAAACGGAAACAAATTAGTTATTCACACCTGAACCAGACTCTTGGCAATGTTACCTGGCCTGGTGGAAAGACAGAAAAACCGCGTGGATGGGTGCTTGCAGACAATGAAAGACCATTAATAATTGGAGTGCCACATAGAGTAAGTTTTGTTGAATTTGTTACTGCAGTCAATGGAAGCCACAAAAACATTGAAGGATACTGTATCGATCTGTTCAATGAAGCAAGAAAGCTGGTTCCTTATGATGTTCCTTACAGATTAATACCTTTTGGAAATGGCTACTCCAATCCTAGTTATGATGACCTTGTGAAGAACGTGGCAAATGGCATATTCGATGCAGCTGTTGGAGATATTGCAATTGTGACCAATCGCACACGGATTGTAGACTTTTCACAGCCTTTTGCTTCTACCGGTCTTGTTATTGTGGCTCCAATAAAAAATTCAAAGTCAAATGCTTGGGTGTTCCTTAAGCCATTTACAGTAGAGATGTGGTGCGTAACATCGGCATCCTTTTTTATGATTGGGGCAGTCATATGGCTTCTTGAGCACCGAGTAAATGACGATTTCCGTGGTCCACCAAAGAGGCAGCTAATGACAGTAATACTGTTCAGCTTCTCAACATTGTTTAAAACAAACCAGGAAGCTACTGTAAGTCCACTTGGACGTATGGTAATGGTGGTGTGGCTTTTCTTATTGATGGTTATCACATCTAGCTATACAGCCAGTCTCACTTCAATCCTTACAGTTCAGCAGCTTTCATCTCCCATTAAAGGACTTGATGACTTGATTACTAATGAACAGCCAATTGGCTACCAGGTAGGATCGTTTGCGTATAGCTATCTGACCGAGAGTCTATACGTTCCACGATCGAGGCTTGTATCTCTAGGCTCTCCAGATGAGTATGAAAAAGCACTGCTGAAGGGGCCATTCAGAAAAGGAGGGGTGGCGGCTATTGTAGATGAACTTCCATATGTGGAATTATTCTTATCGGGAAGGAATGATTTCGGAATGATCGGACAGCCATTCACCAAGAGCGGATGGGGATTTGCTTTTCAGAGAGGATCACCACTTGCAGTAGACATGTCAACTGCAATTCTAAAGCTTTCTGAAAATGGAAAGCTTCAGAAGATCCATGAGAAGTGGTTTTGCAGAATGGGTTGTCCTGCGGAGAGGAGAAGGAAATCTAAGCCTATACAACTTCAGTTGGTCAGCTTCTGGGGTCTTTATCTGTTGTGCGGTGCCTTTTCACTCGTTGCTCTTTTTATATTTTTGCTGCGTATAGTTCGACAATTTGCTCGCTACATACGACAACAGAAGGAATCATCTCAAGCAGATTTGATGTCATCAAATTCAAACTCAAGCTGGACTCAGGTTATATATAAGTTTATCGACTTTGTTGATGAGAAGGAAGAAGCTATCAAGAGACTTTTCCGAAAGCATGATACTCAGAATAGGCTAACTGATAGCTCATCGATATGTGTTCAAAATACTTGCAGTCAAAATCTCTAA 2787 40.98 MESLFVLTLLSSIWAFLTGSACCQRPAVVNIGAVFTFDSIIGRAAKVAMEAAVSDVNADPSILNGTKLNLVMADTHCNVLLGSIGAFQVLEKDVVAIVGPQSSVVAHMVLQIANNLQVPLISYAATDPTLSALQFPFFLRTTQSDAYQMTAMADLIDFYEWKEVIMIFVDDDYGRNGISTLTDELDKRMFKISYKIPLPSHCNLSEITAILNKSKLLGPRVYVVHVNPDPRLSIFKIAHQLDMMTSDYVWLATDWLSTTLDSVLLVQQTSINILQGVVVLRQHIPESSQKITLWSRLRKMLPEDSRNSSLNVYALSAYDTIQVVARAIDKFLNEGRSITFSLKNKFHDLNTSRMPWGKLKIFDDGALLLSILLQANFTGLSGQIEFNSDRNIVTRGYDVINIDQTGLRRVGYWSNVTGFTIQSPETLKRKQISYSHLNQTLGNVTWPGGKTEKPRGWVLADNERPLIIGVPHRVSFVEFVTAVNGSHKNIEGYCIDLFNEARKLVPYDVPYRLIPFGNGYSNPSYDDLVKNVANGIFDAAVGDIAIVTNRTRIVDFSQPFASTGLVIVAPIKNSKSNAWVFLKPFTVEMWCVTSASFFMIGAVIWLLEHRVNDDFRGPPKRQLMTVILFSFSTLFKTNQEATVSPLGRMVMVVWLFLLMVITSSYTASLTSILTVQQLSSPIKGLDDLITNEQPIGYQVGSFAYSYLTESLYVPRSRLVSLGSPDEYEKALLKGPFRKGGVAAIVDELPYVELFLSGRNDFGMIGQPFTKSGWGFAFQRGSPLAVDMSTAILKLSENGKLQKIHEKWFCRMGCPAERRRKSKPIQLQLVSFWGLYLLCGAFSLVALFIFLLRIVRQFARYIRQQKESSQADLMSSNSNSSWTQVIYKFIDFVDEKEEAIKRLFRKHDTQNRLTDSSSICVQNTCSQNL* 929
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 7129683 7134936 - Chy11G191860.1 Chy11g00606 236367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00606 928 Pfam Ligand-gated ion channel 809 839 IPR001320 GO:0015276|GO:0016020
Chy11g00606 928 PIRSF IGluLR_plant 1 927 IPR017103 -
Chy11g00606 928 PANTHER GLUTAMATE RECEPTOR 3.7 13 910 - -
Chy11g00606 928 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 13 910 - -
Chy11g00606 928 Pfam Receptor family ligand binding region 46 403 IPR001828 -
Chy11g00606 928 Pfam Bacterial extracellular solute-binding proteins, family 3 487 808 IPR001638 -
Chy11g00606 928 SUPERFAMILY Periplasmic binding protein-like II 441 808 - -
Chy11g00606 928 Gene3D - 144 418 - -
Chy11g00606 928 SUPERFAMILY Periplasmic binding protein-like I 22 457 IPR028082 -
Chy11g00606 928 SMART GluR_14 467 810 IPR001320 GO:0015276|GO:0016020
Chy11g00606 928 Gene3D - 47 394 - -
Chy11g00606 928 Gene3D - 578 711 - -
Chy11g00606 928 CDD PBP1_GABAb_receptor_plant 30 420 IPR044440 -
Chy11g00606 928 Gene3D - 471 577 - -
Chy11g00606 928 Gene3D - 756 815 - -
Chy11g00606 928 CDD GluR_Plant 464 808 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy01g00422 Chy-Chr1:2975575 Chy11g00606 Chy-Chr11:7129683 0 dispersed
Chy11g00602 Chy-Chr11:6997659 Chy11g00606 Chy-Chr11:7129683 0 dispersed
Chy11g00606 Chy-Chr11:7129683 Chy03g00642 Chy-Chr3:8928882 3.75E-151 dispersed
Chy11g00605 Chy-Chr11:7097027 Chy11g00606 Chy-Chr11:7129683 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00606 K05387 - csv:101215715 1783.46