Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00664 ATGATTGAGAAAATGGCCGACGACGAATTCTCCAATTGTTTTCTCCAAATCCCCCTCACTGGATCCAACCCTTCTCTTCTCAAGAAGAAGAGAAACCTTCCGGGAACTCCAGATCCAGAAGCAGAAGTGATAGCGTTATCGCCGAAGACGTTGTTGGCAACGAACAGATTCGTATGCGAAATATGCGGAAAAGGGTTTCAGAGAGACCAAAACTTGCAGCTACACAGGCGAGGGCATAACCTTCCATGGAAGCTAAAGCAAAGAAGTAACAAAGAAGCAAAGAAAAGAGTGTATGTATGTCCTGAGAAAAGCTGTGTGCATCATCATCCATCAAGAGCTTTGGGAGATCTTACAGGAATAAAAAAGCACTTTTGTAGAAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGTTCAAAGAGATATGCTGTACAATCTGATTGGAAAGCACACTCCAAAACTTGTGGTACTAGAGAATACAAATGTGATTGTGGAACACTATTTTCAAGGAGAGATAGCTTCATAACTCACAGGGCATTTTGTGATGCGTTAGCAGAAGAAACAGCAAGAGTAAAAGCAGGAACAACAATAAGCAATTTGAACTATAATTTAATGGGAGGATGGAGAGATCATGATGAAACAGCAGGGGTATTCATGACTCAACATTTCGGTTCAACAATGAAGCCGGTTACAATGAAAATGAGCAGTAATAGTGTTCAAATGATTGGAGGAATGATGATGAATAATTCAGGAGGGGGAATGTACGGTGACGATTCAGTTTGGGGAAATCAAGTACAAATGGGGAATTATTATTATAATGAAAATCAAGGGTTAATGGTGAATAATGGAGGAGGGGTTTGTTCACTATACAGCCATGAATTTCAGCAAGTAAATGAAACCCAGATGGGAAATATGTCAGCAACAGCTTTGTTGCAAAAAGCTGCTGAAATTGGGGCAACTTCATCTGCTTCTTCTAACACTGTTACAAGATCTGCAGCCCCATCATTATCACTACTACAAATTCAACAACAAGGGTTTTTGTTTAATAATGGGAGTGAGTTTTGTAATACAAATAATAATCCGATTGTTGTAGTTGAGAATAATGGGAGTGAGATGTACACTGCAAAACGGCGTCGTAGTCAGAGTGAATTTGAGTGTGGAAATGGAAATGGAACAACAGGAACAGAAACTGGGGAGACAAGGGATTTTCTTGGAGTTGGTGCCAAAACTATATGTCACGCCTCAACGTCAATCAACGGATGGATTTAG 1269 40.11 MIEKMADDEFSNCFLQIPLTGSNPSLLKKKRNLPGTPDPEAEVIALSPKTLLATNRFVCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEAKKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTLFSRRDSFITHRAFCDALAEETARVKAGTTISNLNYNLMGGWRDHDETAGVFMTQHFGSTMKPVTMKMSSNSVQMIGGMMMNNSGGGMYGDDSVWGNQVQMGNYYYNENQGLMVNNGGGVCSLYSHEFQQVNETQMGNMSATALLQKAAEIGATSSASSNTVTRSAAPSLSLLQIQQQGFLFNNGSEFCNTNNNPIVVVENNGSEMYTAKRRRSQSEFECGNGNGTTGTETGETRDFLGVGAKTICHASTSINGWI* 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 8175368 8176812 + Chy11G192440.1 Chy11g00664 236425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00664 422 MobiDBLite consensus disorder prediction 384 399 - -
Chy11g00664 422 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 24 415 - -
Chy11g00664 422 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 79 IPR013087 -
Chy11g00664 422 PANTHER ZINC FINGER PROTEIN MAGPIE 24 415 - -
Chy11g00664 422 MobiDBLite consensus disorder prediction 379 399 - -
Chy11g00664 422 SUPERFAMILY beta-beta-alpha zinc fingers 56 153 IPR036236 -
Chy11g00664 422 ProSitePatterns Zinc finger C2H2 type domain signature. 59 79 IPR013087 -
Chy11g00664 422 Gene3D Classic Zinc Finger 126 192 - -
Chy11g00664 422 SMART c2h2final6 133 153 IPR013087 -
Chy11g00664 422 SMART c2h2final6 57 79 IPR013087 -
Chy11g00664 422 Pfam Zinc finger, C2H2 type 57 79 IPR013087 -
Chy11g00664 422 Gene3D Classic Zinc Finger 35 110 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Chy01g00470 Chy11g00664 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g00663 Chy-Chr2:4027016 Chy11g00664 Chy-Chr11:8175368 1.33E-113 dispersed
Chy04g02074 Chy-Chr4:26207043 Chy11g00664 Chy-Chr11:8175368 2.19E-115 dispersed
Chy07g00247 Chy-Chr7:1959247 Chy11g00664 Chy-Chr11:8175368 1.70E-111 dispersed
Chy07g01281 Chy-Chr7:17522003 Chy11g00664 Chy-Chr11:8175368 3.42E-112 dispersed
Chy08g00823 Chy-Chr8:15781028 Chy11g00664 Chy-Chr11:8175368 1.51E-106 dispersed
Chy10g00017 Chy-Chr10:579188 Chy11g00664 Chy-Chr11:8175368 1.20E-95 dispersed
Chy01g01561 Chy-Chr1:21569039 Chy11g00664 Chy-Chr11:8175368 5.40E-113 transposed
Chy01g01661 Chy-Chr1:22549641 Chy11g00664 Chy-Chr11:8175368 4.19E-111 transposed
Chy08g01019 Chy-Chr8:17381947 Chy11g00664 Chy-Chr11:8175368 2.97E-105 transposed
Chy01g00470 Chy-Chr1:3401406 Chy11g00664 Chy-Chr11:8175368 1.81E-109 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18700 PF00096 zf-C2H2 0.0018 CL0361 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00664 K25870 - csv:101211656 841.262