Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00733 GTTTTGGAAAGAAATTCACCATATTTGGCAGTCCCTGAAGAAGCCACTCTTGGGTTTGAAAATTTGAACTCAGAGAGATCTGAAAAGTCAATTGCAAAGATGGGTTTCATGTGTGATTTTTGTGGGGATCAGAGGTCAATGGTTTACTGCCGATCTGATGCTGCATGTTTGTGCTTATCATGTGACCGTAATGTCCATTCTGCTAACGCCTTGTCGAGGCGTCATACGAGAACACTGTTGTGTGAAAGATGCCATTTGCAACCCTCCACAGTGAGGTGTATTGAAGAGAGAGTTTCTCTGTGTCAAAATTGTGATTGGACAGGTCATGGCACATCTACCCTTGCTTCATCATCACACAAGAGACAAACCATCAATTGTTACTCTGGTTGTCCATCGGCTGCTGAACTTTCATGCATCTGGTCCTTTGTGTTGGATGTTCCATCTGTAAATGATGCTTGTGAGAAAGAGTTGGGATTGATGAGCATTGCTGAAACTGACTTGACGGGCGCCTGGAGTCTTTCGGAGAACAACGCTGGTCAAAGAATGCCTGGGTCAACTGAAGCCAGTGATGTTTGTAGCAGGGAAAAGTCAAATGTTTTGGTTGGATCATCTTCACTCATTGGCTCTAGGCCTCACACTTCAGATCAGCCAGTTGAATTGGATAATGTGGCTTTACCCAAGTTTTGCTGTCCTGGAACAAAAGTTGCTGAAGTCTGCTGTGAGGATGACGACCTCTACAAGGAGTTTGATATGGATGAAATGGATTTGAATCTTGAAAATTATGAGGACCTATTTAGCATGAGCCTTAATCATTCTGAAGAGTTTTTTGAGAATGGTGGAATTGAAAGCTTTTTTGAGGCAAAAGGCCTGTCTTTTGAAGATTCAGTTTCCCACAGTGCAGTTGTTGCAGAGGGTTCTTCCATGGGAGTGGTCCAACAAATGCAGCCAGCTTACAGCAATGGTGCCTCTGCTGACTCAGTGATGAGTACTAAAACCGAACCGATTCTCTGTTTCAATTCAAGGCAAGCCCAGTCGGGTATGTCCTTTTCTGGCCTTACTGGTGAGAGTAGTGCTGGTGATCATCAAGACTGTGGAGCCTCTTCAATGCTTTTAATGGGTGAGCCTCCATGGTGTGCACCTGGCACTGAAAGTTCGTTCCCATCTACTGATCGCAATAGTGCCGTTCAGCGTTATAAGGAGAAAAAGAAGACGCGCAAGTTTGAGAAAACAGTGAGATACGCCACTCGCAAAGCGAGAGCTGATGTCAGAAGGCGTGTGAAGGGACGGTTTGTGAAGGCTGGAGAGGCGTATGATTATGACCCACTAAACCAGGCTAGAAGCTGCTGA 1347 45.14 VLERNSPYLAVPEEATLGFENLNSERSEKSIAKMGFMCDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHTRTLLCERCHLQPSTVRCIEERVSLCQNCDWTGHGTSTLASSSHKRQTINCYSGCPSAAELSCIWSFVLDVPSVNDACEKELGLMSIAETDLTGAWSLSENNAGQRMPGSTEASDVCSREKSNVLVGSSSLIGSRPHTSDQPVELDNVALPKFCCPGTKVAEVCCEDDDLYKEFDMDEMDLNLENYEDLFSMSLNHSEEFFENGGIESFFEAKGLSFEDSVSHSAVVAEGSSMGVVQQMQPAYSNGASADSVMSTKTEPILCFNSRQAQSGMSFSGLTGESSAGDHQDCGASSMLLMGEPPWCAPGTESSFPSTDRNSAVQRYKEKKKTRKFEKTVRYATRKARADVRRRVKGRFVKAGEAYDYDPLNQARSC* 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 9809676 9816928 - Chy11G193130.1 Chy11g00733 236494

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00733 448 CDD Bbox1_BBX-like 80 124 - -
Chy11g00733 448 SMART bboxneu5 33 80 IPR000315 GO:0008270
Chy11g00733 448 ProSiteProfiles CCT domain profile. 391 433 IPR010402 GO:0005515
Chy11g00733 448 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 9-LIKE 34 447 - -
Chy11g00733 448 ProSiteProfiles Zinc finger B-box type profile. 33 80 IPR000315 GO:0008270
Chy11g00733 448 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 34 447 - -
Chy11g00733 448 CDD Bbox1_BBX-like 38 80 - -
Chy11g00733 448 Pfam CCT motif 391 433 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00733 - - - csv:101216401 824.698
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Chy01g00545 Chy11g00733 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy02g02191 Chy-Chr2:26080814 Chy11g00733 Chy-Chr11:9809676 2.86E-30 dispersed
Chy07g00776 Chy-Chr7:8917093 Chy11g00733 Chy-Chr11:9809676 1.66E-15 dispersed
Chy11g00590 Chy-Chr11:6716655 Chy11g00733 Chy-Chr11:9809676 6.43E-58 dispersed
Chy11g00733 Chy-Chr11:9809676 Chy02g02192 Chy-Chr2:26089518 2.56E-08 dispersed
Chy07g01493 Chy-Chr7:19217216 Chy11g00733 Chy-Chr11:9809676 1.89E-14 transposed
Chy10g01184 Chy-Chr10:16610334 Chy11g00733 Chy-Chr11:9809676 9.46E-08 transposed
Chy01g00545 Chy-Chr1:3890907 Chy11g00733 Chy-Chr11:9809676 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g541 Blo02g00107 . . Bda13g00629 . Bpe15g00764 . . . . Cma02g00242 Cma20g00636 Car02g00129 Car20g00602 . . . . . . . . . . . . . . . . . Cone3ag1271 . Cone8ag1452 Cone12ag1396 . . Chy11g00733 . . . . . Bpe14g00696 . Bma02g01294 . . Cmo02g00244 Cmo20g00608 . . . . Cpe16g00362 Cpe05g01383 Bhi10g01471 . . . Hepe08g0483 . . Cla02g00819 Cam02g0985 Cec02g0874 Cco02g0903 Clacu02g0865 Cmu02g0856 Cre02g1172 . . . Cme11g00764
Vvi12g737 . Blo15g00433 . . Bpe12g00169 Bpe15g00764 Bma03g00658 Bma08g00690 . Cmo19g00853 Cma02g00242 Cma20g00703 . . . Cpe15g00673 Cpe04g00659 Bhi05g01505 . . Lac12g0415 Hepe02g0327 . . Cla02g00307 Cam02g0316 Cec02g0317 Cco02g0319 Clacu02g0307 Cmu02g0306 Cre02g0639 Cone3ag1271 . Cone8ag1358 Cone12ag1303 . Csa07g00235 Chy11g00733 Cme01g00573 . Blo13g00448 Bda14g00661 . . Bpe07g00668 Bma02g01294 Bma12g00873 . Cmo02g00244 . . Cma19g00837 Car11g01444 Car19g00649 . Cpe05g01383 Bhi10g01288 . . . Hepe08g0372 . . . . . . . . . Lsi11g01330 Csa06g00975 Chy01g00545 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Chy03g01067 . 6 328 C2C2-CO-like Transcription Factor Family AT5G15850 50.1 2.1e-38 156.8
Chy03g01067 . 1 320 C2C2-CO-like Transcription Factor Family AT5G24930 63.2 4.5e-81 298.5
Chy02g02192 . 20 376 C2C2-CO-like Transcription Factor Family AT5G24930 50.9 5.3e-58 221.9
Chy02g02192 . 1 376 C2C2-CO-like Transcription Factor Family AT5G57660 52.1 1.0e-69 260.8
Chy02g02191 CCT 15 366 C2C2-CO-like Transcription Factor Family AT5G57660 50.6 3.1e-58 222.6
Chy03g01067 . 2 331 C2C2-CO-like Transcription Factor Family AT5G57660 51.0 5.6e-52 201.8
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT3G07650 54.5 7.1e-90 327.8
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 6.0e-89 324.7
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.1e-87 320.5
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.7e-86 315.5
Chy11g00733 CCT 34 447 C2C2-CO-like Transcription Factor Family AT5G48250 54.8 1.1e-87 320.5
Chy01g00545 CCT 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 55.1 3.7e-86 315.5
Chy11g00343 . 1 124 C2C2-CO-like Transcription Factor Family AT1G75540 65.9 2.4e-41 166.4
Chy07g00978 . 1 298 C2C2-CO-like Transcription Factor Family AT1G78600 51.5 1.1e-78 290.4
Chy07g01229 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 60.9 3.4e-55 211.5
Chy02g00591 . 1 117 C2C2-CO-like Transcription Factor Family AT2G21320 76.1 2.2e-49 192.2
Chy07g01229 . 1 201 C2C2-CO-like Transcription Factor Family AT4G38960 60.2 2.3e-57 218.8
Chy02g00591 . 1 110 C2C2-CO-like Transcription Factor Family AT4G38960 80.0 6.7e-49 190.7
Chy11g00343 . 1 124 C2C2-CO-like Transcription Factor Family AT4G39070 67.7 2.6e-40 162.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18707 PF06203 CCT 5.00E-16 CL0281 Chy TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Chy11g00733 Chy_Chr11 FPKM 25.968687 28.053333 0.76263 1.190512 0.247078 0.0 0.0 2.902474 2.662871 2.88983