Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00773 ATGGAGAGACAATATGGATCAAATAGTTTCAGTCCATGTTCCTCCATTTCTAGTGGGGTTCTACAAGAAACTGTAGATGTCACTAAATGTTTGACGGAAGCCAATGAATTAATCGAAGCCATAGGGGCTTTTTCTGGGTTTCGAAAGACCCAATCTAAGGAGTGTTTGAATTTGGTTAGGAGGTTGAAGATGCTTGTTCCTTTGTTGGAGGAGATTAGAGACCTTCATGATATGCTTCCTGCTGAGGCTTTGAGTTCCCATATTTCTCTTTTGAAAGAGGCTCTTGTTTTGGCCAAAAGGTTACTGAAGAATTGTCACAACGGGAGTAAGATTTACCTGGCGTTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGTTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATACCTTGTGATGAGCTTGGAGTCTCAGTTGAATTGCAAGAGCAAGTTGAGCTCATGTCGACACAACTCAAAAGAGCAAAGTGTAGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTTGTTTTTTCTAAAAACGACGAGAGAAATGCTGATCCTGTTATACTTGAAAGATTGGCAAATAAATTAGAACTACGTAAAATTGCTGATTTGGAAGCAGAAACTATAGCTGTACAAAAATTAGTTAGACATAGAGGTGTGCCGAATTCTGAAAGTCTCCAGCAAATTATAGACCTTCTACGCAAGTTTAAACAAATTGCAGGTATGGACAATAATGTTGCTCCTGATGGTCCTGTTGTGTCGAAAAGTCTTCAACGGTGTAAATCTACATTAATCCCTCATGAATTCCTCTGTCCCATTACCTTGGAAATCATGACAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGAATTCTAACCACCGGACCTGCCCGAAAACCGGACAAACATTAGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGCAATGGTGTCAAAAGAATAACTATGAATTGCCGAAGAAGGAAGTAGTTGCCGGAATGGGAGACACTCCACCCGATCTCGCTCGAGAAATCTCCTCTTTAGTCCACAATCTATCCTCGAGCCAGTTGGATGTCCAGAGAGAGGCTATCATCAAGATCCGTGTCCTTTCCAAGGAGAACCCTGAGAACAGAGTTTGGATCGCAAATAGTGGAGTCATCCCTCCGTTGGTTAAGCTTCTCTCCTACCCAGATCTCAATTTCCAAGAACACACGGTGACCGCTCTATTGAACTTGTCTATTGACGATGCGAATAAAAGACTCATAGCGAGAGAAGGAGCAATTCCTGCTATCATAGAAATCCTGCAGCGTGGAACGGAGGAGGCTAAGGAAAATTCTGCTGCTGCCCTGTTTAGCTTGTCAATGTTAGATGAAAACAAGGTTCTGATTGGTTCTCTGAAGGGAATTCCGCCGTTGGTATTACTTCTTCGAGACGGTACAATCCGAGGGAAGAAGGATGCTGCCACTGCACTGTTTAACCTGTCACTGAATCAAGCAAACAAGTCCCGAGCCATCAAAGCCGGCATCATACAGCCCCTTCTCGCTTTGCTGGAGGATAAGAATTTAGGAATGGTTGATGAAGCGTTATCAATCTTGTTACTCCTTGCATCACATCCCGAGGGACGGTCCGAGATCGGCAATAACTCTTTCATTCAAATTCTAGTGAACATCATAATAGACGGGACTCCGAAGAACAAGGAATGTGCTACATCGCTGCTTCTGGAGCTGGGACGAAACAATTCGCCTTCCATTCTGGTTGCACTGCAATTTGGAGTATATGAACATCTGGTAGAGCTAACAAGATGTGGGACAAGTAGAGCCCAGAGAAAAGCAACCTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTAA 1938 43.19 MERQYGSNSFSPCSSISSGVLQETVDVTKCLTEANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMLPAEALSSHISLLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHVVYDKLKEALDGIPCDELGVSVELQEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLELRKIADLEAETIAVQKLVRHRGVPNSESLQQIIDLLRKFKQIAGMDNNVAPDGPVVSKSLQRCKSTLIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKTGQTLVHLSLAPNYALKNLILQWCQKNNYELPKKEVVAGMGDTPPDLAREISSLVHNLSSSQLDVQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQRGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLRDGTIRGKKDAATALFNLSLNQANKSRAIKAGIIQPLLALLEDKNLGMVDEALSILLLLASHPEGRSEIGNNSFIQILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKATSLLQYMSKCEHIP* 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 10806676 10809848 - Chy11G193530.1 Chy11g00773 236534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00773 645 Gene3D - 364 481 IPR011989 -
Chy11g00773 645 PANTHER U BOX DOMAIN-CONTAINING 28 642 - -
Chy11g00773 645 SMART arm_5 394 434 IPR000225 GO:0005515
Chy11g00773 645 SMART arm_5 517 557 IPR000225 GO:0005515
Chy11g00773 645 SMART arm_5 476 516 IPR000225 GO:0005515
Chy11g00773 645 SMART arm_5 600 640 IPR000225 GO:0005515
Chy11g00773 645 SMART arm_5 558 598 IPR000225 GO:0005515
Chy11g00773 645 SMART arm_5 435 475 IPR000225 GO:0005515
Chy11g00773 645 Coils Coil 146 166 - -
Chy11g00773 645 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 28 642 - -
Chy11g00773 645 SUPERFAMILY RING/U-box 271 346 - -
Chy11g00773 645 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Chy11g00773 645 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 487 529 IPR000225 GO:0005515
Chy11g00773 645 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Chy11g00773 645 Gene3D - 26 139 IPR036537 GO:0007166
Chy11g00773 645 CDD RING-Ubox_PUB 275 317 IPR045210 -
Chy11g00773 645 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 345 IPR013083 -
Chy11g00773 645 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 446 488 IPR000225 GO:0005515
Chy11g00773 645 Pfam U-box domain 271 341 IPR003613 GO:0004842|GO:0016567
Chy11g00773 645 Pfam Armadillo/beta-catenin-like repeat 477 515 IPR000225 GO:0005515
Chy11g00773 645 Pfam Armadillo/beta-catenin-like repeat 394 433 IPR000225 GO:0005515
Chy11g00773 645 SUPERFAMILY ARM repeat 365 639 IPR016024 -
Chy11g00773 645 Gene3D - 482 643 IPR011989 -
Chy11g00773 645 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 405 447 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy10g01080 Chy-Chr10:15896281 Chy11g00773 Chy-Chr11:10806676 2.89E-15 dispersed
Chy11g00773 Chy-Chr11:10806676 Chy11g01242 Chy-Chr11:18538898 6.00E-154 dispersed
Chy11g00773 Chy-Chr11:10806676 Chy12g00185 Chy-Chr12:2245357 1.49E-168 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00773 - - csv:101214151 1226.85