Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Chy11g00773 | ATGGAGAGACAATATGGATCAAATAGTTTCAGTCCATGTTCCTCCATTTCTAGTGGGGTTCTACAAGAAACTGTAGATGTCACTAAATGTTTGACGGAAGCCAATGAATTAATCGAAGCCATAGGGGCTTTTTCTGGGTTTCGAAAGACCCAATCTAAGGAGTGTTTGAATTTGGTTAGGAGGTTGAAGATGCTTGTTCCTTTGTTGGAGGAGATTAGAGACCTTCATGATATGCTTCCTGCTGAGGCTTTGAGTTCCCATATTTCTCTTTTGAAAGAGGCTCTTGTTTTGGCCAAAAGGTTACTGAAGAATTGTCACAACGGGAGTAAGATTTACCTGGCGTTTGAGAATGAGGCTGTGATGGCAAGGTTTCATGTTGTTTATGACAAATTGAAGGAGGCCCTTGATGGGATACCTTGTGATGAGCTTGGAGTCTCAGTTGAATTGCAAGAGCAAGTTGAGCTCATGTCGACACAACTCAAAAGAGCAAAGTGTAGGAAAGATACACAAGACATGGAACTAGCAATGGACATGATGGTTGTTTTTTCTAAAAACGACGAGAGAAATGCTGATCCTGTTATACTTGAAAGATTGGCAAATAAATTAGAACTACGTAAAATTGCTGATTTGGAAGCAGAAACTATAGCTGTACAAAAATTAGTTAGACATAGAGGTGTGCCGAATTCTGAAAGTCTCCAGCAAATTATAGACCTTCTACGCAAGTTTAAACAAATTGCAGGTATGGACAATAATGTTGCTCCTGATGGTCCTGTTGTGTCGAAAAGTCTTCAACGGTGTAAATCTACATTAATCCCTCATGAATTCCTCTGTCCCATTACCTTGGAAATCATGACAGATCCTGTCATTGTGGCTACTGGGCAGACTTATGACCGAGAAAGTATACAGAAATGGTTGAATTCTAACCACCGGACCTGCCCGAAAACCGGACAAACATTAGTGCATTTGTCACTAGCTCCAAATTATGCCCTCAAGAACCTCATTTTGCAATGGTGTCAAAAGAATAACTATGAATTGCCGAAGAAGGAAGTAGTTGCCGGAATGGGAGACACTCCACCCGATCTCGCTCGAGAAATCTCCTCTTTAGTCCACAATCTATCCTCGAGCCAGTTGGATGTCCAGAGAGAGGCTATCATCAAGATCCGTGTCCTTTCCAAGGAGAACCCTGAGAACAGAGTTTGGATCGCAAATAGTGGAGTCATCCCTCCGTTGGTTAAGCTTCTCTCCTACCCAGATCTCAATTTCCAAGAACACACGGTGACCGCTCTATTGAACTTGTCTATTGACGATGCGAATAAAAGACTCATAGCGAGAGAAGGAGCAATTCCTGCTATCATAGAAATCCTGCAGCGTGGAACGGAGGAGGCTAAGGAAAATTCTGCTGCTGCCCTGTTTAGCTTGTCAATGTTAGATGAAAACAAGGTTCTGATTGGTTCTCTGAAGGGAATTCCGCCGTTGGTATTACTTCTTCGAGACGGTACAATCCGAGGGAAGAAGGATGCTGCCACTGCACTGTTTAACCTGTCACTGAATCAAGCAAACAAGTCCCGAGCCATCAAAGCCGGCATCATACAGCCCCTTCTCGCTTTGCTGGAGGATAAGAATTTAGGAATGGTTGATGAAGCGTTATCAATCTTGTTACTCCTTGCATCACATCCCGAGGGACGGTCCGAGATCGGCAATAACTCTTTCATTCAAATTCTAGTGAACATCATAATAGACGGGACTCCGAAGAACAAGGAATGTGCTACATCGCTGCTTCTGGAGCTGGGACGAAACAATTCGCCTTCCATTCTGGTTGCACTGCAATTTGGAGTATATGAACATCTGGTAGAGCTAACAAGATGTGGGACAAGTAGAGCCCAGAGAAAAGCAACCTCACTTTTGCAGTATATGAGCAAGTGTGAACACATTCCCTAA | 1938 | 43.19 | MERQYGSNSFSPCSSISSGVLQETVDVTKCLTEANELIEAIGAFSGFRKTQSKECLNLVRRLKMLVPLLEEIRDLHDMLPAEALSSHISLLKEALVLAKRLLKNCHNGSKIYLAFENEAVMARFHVVYDKLKEALDGIPCDELGVSVELQEQVELMSTQLKRAKCRKDTQDMELAMDMMVVFSKNDERNADPVILERLANKLELRKIADLEAETIAVQKLVRHRGVPNSESLQQIIDLLRKFKQIAGMDNNVAPDGPVVSKSLQRCKSTLIPHEFLCPITLEIMTDPVIVATGQTYDRESIQKWLNSNHRTCPKTGQTLVHLSLAPNYALKNLILQWCQKNNYELPKKEVVAGMGDTPPDLAREISSLVHNLSSSQLDVQREAIIKIRVLSKENPENRVWIANSGVIPPLVKLLSYPDLNFQEHTVTALLNLSIDDANKRLIAREGAIPAIIEILQRGTEEAKENSAAALFSLSMLDENKVLIGSLKGIPPLVLLLRDGTIRGKKDAATALFNLSLNQANKSRAIKAGIIQPLLALLEDKNLGMVDEALSILLLLASHPEGRSEIGNNSFIQILVNIIIDGTPKNKECATSLLLELGRNNSPSILVALQFGVYEHLVELTRCGTSRAQRKATSLLQYMSKCEHIP* | 646 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 10806676 | 10809848 | - | Chy11G193530.1 | Chy11g00773 | 236534 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Chy11g00773 | 645 | Gene3D | - | 364 | 481 | IPR011989 | - | |
Chy11g00773 | 645 | PANTHER | U BOX DOMAIN-CONTAINING | 28 | 642 | - | - | |
Chy11g00773 | 645 | SMART | arm_5 | 394 | 434 | IPR000225 | GO:0005515 | |
Chy11g00773 | 645 | SMART | arm_5 | 517 | 557 | IPR000225 | GO:0005515 | |
Chy11g00773 | 645 | SMART | arm_5 | 476 | 516 | IPR000225 | GO:0005515 | |
Chy11g00773 | 645 | SMART | arm_5 | 600 | 640 | IPR000225 | GO:0005515 | |
Chy11g00773 | 645 | SMART | arm_5 | 558 | 598 | IPR000225 | GO:0005515 | |
Chy11g00773 | 645 | SMART | arm_5 | 435 | 475 | IPR000225 | GO:0005515 | |
Chy11g00773 | 645 | Coils | Coil | 146 | 166 | - | - | |
Chy11g00773 | 645 | PANTHER | RING-TYPE E3 UBIQUITIN TRANSFERASE | 28 | 642 | - | - | |
Chy11g00773 | 645 | SUPERFAMILY | RING/U-box | 271 | 346 | - | - | |
Chy11g00773 | 645 | ProSiteProfiles | U-box domain profile. | 270 | 344 | IPR003613 | GO:0004842|GO:0016567 | |
Chy11g00773 | 645 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 487 | 529 | IPR000225 | GO:0005515 | |
Chy11g00773 | 645 | SMART | Ubox_2 | 274 | 337 | IPR003613 | GO:0004842|GO:0016567 | |
Chy11g00773 | 645 | Gene3D | - | 26 | 139 | IPR036537 | GO:0007166 | |
Chy11g00773 | 645 | CDD | RING-Ubox_PUB | 275 | 317 | IPR045210 | - | |
Chy11g00773 | 645 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 271 | 345 | IPR013083 | - | |
Chy11g00773 | 645 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 446 | 488 | IPR000225 | GO:0005515 | |
Chy11g00773 | 645 | Pfam | U-box domain | 271 | 341 | IPR003613 | GO:0004842|GO:0016567 | |
Chy11g00773 | 645 | Pfam | Armadillo/beta-catenin-like repeat | 477 | 515 | IPR000225 | GO:0005515 | |
Chy11g00773 | 645 | Pfam | Armadillo/beta-catenin-like repeat | 394 | 433 | IPR000225 | GO:0005515 | |
Chy11g00773 | 645 | SUPERFAMILY | ARM repeat | 365 | 639 | IPR016024 | - | |
Chy11g00773 | 645 | Gene3D | - | 482 | 643 | IPR011989 | - | |
Chy11g00773 | 645 | ProSiteProfiles | Armadillo/plakoglobin ARM repeat profile. | 405 | 447 | IPR000225 | GO:0005515 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Chy10g01080 | Chy-Chr10:15896281 | Chy11g00773 | Chy-Chr11:10806676 | 2.89E-15 | dispersed | |
Chy11g00773 | Chy-Chr11:10806676 | Chy11g01242 | Chy-Chr11:18538898 | 6.00E-154 | dispersed | |
Chy11g00773 | Chy-Chr11:10806676 | Chy12g00185 | Chy-Chr12:2245357 | 1.49E-168 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Chy11g00773 | - | - | csv:101214151 | 1226.85 |