Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00808 ATGGGGAAAGACGTCGAAGTTGCTGAGCAAGGTGAATTCCAAAGCAAAGACTACCAAGACCCACCTCCCGCCCCTCTCATCGATCCTGAAGAACTCACCAAATGGTCCCTTTACAGAGCCGCCATCGCCGAGTTCATCGCCACTCTCCTCTTCCTTTACGTCACCGTTTTGACCGTTATTGGTTACTCCAACGGAAGGGCCACTACCACTGATCCCTGTAGCGGCGTTGGCATCCTCGGTATCGCTTGGGCATTCGGTGGTATGATCTTCATTCTTGTTTACTGCACCGCCGGTATCTCCGGTGGCCACATTAACCCTGCTGTCACTTTCGGCCTTTTCTTGGCTCGTAAAGTCTCTCTGGTTCGTGCTCTCTTATACATCCTTGCTCAATGTGCCGGTGCTATTTGCGGCTGTGGCTTGGTTAAAGCCTTCCAATCTGCTTATTATGTTAGATATAACGGCGGTGCTAACATGCTTAACGATGGTTACAACAAAGGAACTGGGTTAGGTGCTGAAATTATTGGGACTTTTGTTCTTGTTTACACTGTTTTCTCTGCTACTGATCCCAAGAGAAACGCCAGAGATTCTCACGTTCCTGTTTTGGCTCCTCTCCCAATTGGGTTTGCTGTGTTTATGGTTCATTTGGCTACAATCCCCATTACCGGAACTGGAATAAACCCTGCTAGAAGTTTCGGAGCTGCTGTCATTTTCAACAAAGAGAAAGCCTGGGATGATCAATGGATCTTCTGGGTTGGGCCATTTATTGGAGCTGCAATTGCTGCAATTTACCATCAGTATGTGCTCAGAGCTGGCGCCATTAAAGCTCTTGGATCTTTCAGGAGCAACGCTTGA 852 48.12 MGKDVEVAEQGEFQSKDYQDPPPAPLIDPEELTKWSLYRAAIAEFIATLLFLYVTVLTVIGYSNGRATTTDPCSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLVRALLYILAQCAGAICGCGLVKAFQSAYYVRYNGGANMLNDGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAGAIKALGSFRSNA* 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11587712 11588747 - Chy11G193880.1 Chy11g00808 236569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00808 283 MobiDBLite consensus disorder prediction 1 24 - -
Chy11g00808 283 CDD MIP 39 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy11g00808 283 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 283 IPR034294 -
Chy11g00808 283 PANTHER AQUAPORIN PIP2-4-RELATED 1 283 - -
Chy11g00808 283 TIGRFAM MIP: MIP family channel proteins 43 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy11g00808 283 Pfam Major intrinsic protein 31 264 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy11g00808 283 PRINTS Major intrinsic protein family signature 85 109 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy11g00808 283 PRINTS Major intrinsic protein family signature 122 141 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy11g00808 283 PRINTS Major intrinsic protein family signature 207 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy11g00808 283 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy11g00808 283 PRINTS Major intrinsic protein family signature 247 267 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy11g00808 283 PRINTS Major intrinsic protein family signature 171 189 IPR000425 GO:0015267|GO:0016020|GO:0055085
Chy11g00808 283 ProSitePatterns MIP family signature. 103 111 IPR022357 -
Chy11g00808 283 Gene3D Glycerol uptake facilitator protein. 24 283 IPR023271 -
Chy11g00808 283 SUPERFAMILY Aquaporin-like 30 269 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy04g02024 Chy-Chr4:25910361 Chy11g00808 Chy-Chr11:11587712 3.94E-36 dispersed
Chy08g00832 Chy-Chr8:15836718 Chy11g00808 Chy-Chr11:11587712 4.54E-168 dispersed
Chy08g00833 Chy-Chr8:15840346 Chy11g00808 Chy-Chr11:11587712 4.40E-170 dispersed
Chy08g00834 Chy-Chr8:15845458 Chy11g00808 Chy-Chr11:11587712 3.84E-151 dispersed
Chy10g00443 Chy-Chr10:10543368 Chy11g00808 Chy-Chr11:11587712 2.87E-148 dispersed
Chy10g00444 Chy-Chr10:10549469 Chy11g00808 Chy-Chr11:11587712 1.08E-143 dispersed
Chy09g01237 Chy-Chr9:14434288 Chy11g00808 Chy-Chr11:11587712 1.33E-122 transposed
Chy10g01323 Chy-Chr10:17592391 Chy11g00808 Chy-Chr11:11587712 4.45E-162 wgd
Chy11g00808 Chy-Chr11:11587712 Chy04g02069 Chy-Chr4:26182920 4.80E-149 wgd
Chy11g00808 Chy-Chr11:11587712 Chy08g00828 Chy-Chr8:15814032 3.23E-100 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00808 K09872 - csv:101215300 560.451