Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Chy11g00813 ATGAAAGAAGCAGAGAAAAATTTAGATCCTCAACTATGGCACGCCTGTGCTGGAGGTATGGTTCAGATGCCGGCGATTAACTCCAAGGTTTTCTACTTTCCTCAGGGTCACGCCGAGCACGCTCAGGCCACTGTCGATTTCACGTCTTCGCTTAGAATCCCGCCTCTTATTCCTTGCCGGGTGCTCGCCGTCAAGTTCTTGGCTGACCTTGAAACAGATGAGGTTTTTGCTAATGTAAGAATGGTTCCACTGCCGAACAACGACCTTAATTTTGAGGAAGAAGGTGGGTTTGGGAGTAGTGGGTCTGAGAATAATATGGAGAAACCGGCTTCCTTTGCCAAGACGTTGACTCAATCCGATGCCAACAACGGCGGTGGGTTCTCGGTTCCGAGGTACTGTGCAGAGACGATTTTTCCACGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCCAAGGATGTTCATGGCGAGGTTTGGAAGTTCCGCCATATATACAGGGGGACGCCTCGCCGGCATTTGTTGACTACTGGGTGGAGTACTTTTGTTAATCAGAAGAAGCTCGTCGCCGGTGATTCGATTGTTTTTCTAAGATCCAAAAATGGCGACCTCTGTGTCGGAATCCGGCGAGCCAAACGCGCAATTGGGTGTGCCTCCGATCACCCGTACGGATGGAATCCCGGCGGTGGAAATTGCATCCCACCTTACGGTGGATTGACGATGTTTTTAAGAGATGATGACAACAAGTTGAGTAGAAAAGGGTCTTTAAGTTCCAGTGGTAGTGGTGGGAATTTGAGGGGAAAAGGTAAAGTCAGGGCGGAATCAGTGATGGAAGCGGCAGCGCTTGCGGCGAGTGGACAGCCTTTTGAGGTGGTTTATTACCCACGTGCCAGCACGCCGGAGTTTTGTGTTAAGGCCTCATCGGTGAGAGCCGCCATGAGGATCCAATGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAGACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCTTCTGTTCAAGTTGCTGATCCTATCCGTTGGCCTAATTCTCCATGGCGGCTTCTTCAGGTGACATGGGATGAACCAGATTTGTTACAGAATGTGAAGCGTGTTAGTCCATGGTTGGTTGAACTGGTATCGAACATGCCCGTCATTCAATTATCACCGTTTTCTCCACCAAGAAAGAAATTTCGACTACCACAACATCCAGACTTTCCCCTCGACAGCCAATTCCCACTGTCATCATCGTTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTATCGGATTTCCATCTCAACAACAAACTGCAATTAGGGCTGGTTCCGTCCAGTTTTCAGCAGATTGATTTTCACTCTAGGATTTCCAATAGATCAGTTACAGACCACAGAGACAGCAGCAGTCATACCTCTTTGGTGTTGCTAAACGGGGAAAAGACTGGTCCAAAGTTGGAAAGATCCGATTCGGTGAAGAAGCATCAATTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACTTGCAGCTCTTCCAGTGACATTCGCTCACCTCCTACCGAGAAAAGTTCCTCAGATGTGAATCTGGAGAGAGTGAAGTTTCTCTCCCATGGCTCAGGATCCACTTTCAAGCAACAAATTTCTCCAAACAAATCACCAGGAGTAGGATTTCCATGGTACCAGGGTTATCAAGCCACTGAACTCGGCCTAGACATTGGTCACTGCAAGGTATTTATGGAGTCAGAAGATGTGGGCCGGACACTCAACCTTTCGGTCATCAGTTCATATGAAGAACTATACAGGAGGCTTGCGAATATGTTCGGAATGGAAAAACCGGACATTCTTAGCCATGTTTTGTACCAAGATGCAACAGGTGCTGTGAAGCAAGCTGGAGATAAACCATTCAGTGATTTCATCAAAACAGCTAGAAGATTGACGATACTAACGGACTCGGGTTCAGACAAGCTGGGAAGGACATTGATGGATGGAATGAGAAGTGGTGAAAATGGATTAGATGCTTCAAACAAGACTGGCCCTTTGAGCATATTTGCATAG 2151 47.33 MKEAEKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLIPCRVLAVKFLADLETDEVFANVRMVPLPNNDLNFEEEGGFGSSGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCASDHPYGWNPGGGNCIPPYGGLTMFLRDDDNKLSRKGSLSSSGSGGNLRGKGKVRAESVMEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMPVIQLSPFSPPRKKFRLPQHPDFPLDSQFPLSSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISLSDFHLNNKLQLGLVPSSFQQIDFHSRISNRSVTDHRDSSSHTSLVLLNGEKTGPKLERSDSVKKHQFLLFGQPILTEQQITCSSSSDIRSPPTEKSSSDVNLERVKFLSHGSGSTFKQQISPNKSPGVGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVISSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKLGRTLMDGMRSGENGLDASNKTGPLSIFA* 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 11664482 11667345 - Chy11G193930.1 Chy11g00813 236574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Chy11g00813 716 MobiDBLite consensus disorder prediction 540 557 - -
Chy11g00813 716 PANTHER AUXIN RESPONSE FACTOR 2 693 - -
Chy11g00813 716 SUPERFAMILY DNA-binding pseudobarrel domain 105 217 IPR015300 -
Chy11g00813 716 SMART B3_2 112 214 IPR003340 GO:0003677
Chy11g00813 716 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 2 693 IPR044835 GO:0003677|GO:0006355|GO:0009725
Chy11g00813 716 ProSiteProfiles PB1 domain profile. 604 684 IPR000270 GO:0005515
Chy11g00813 716 Pfam Auxin response factor 281 364 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Chy11g00813 716 CDD B3_DNA 111 212 IPR003340 GO:0003677
Chy11g00813 716 Gene3D - 319 392 - -
Chy11g00813 716 Gene3D - 110 214 IPR015300 -
Chy11g00813 716 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Chy11g00813 716 Gene3D - 604 689 - -
Chy11g00813 716 MobiDBLite consensus disorder prediction 540 559 - -
Chy11g00813 716 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Chy03g01011 Chy-Chr3:13661419 Chy11g00813 Chy-Chr11:11664482 9.52E-109 dispersed
Chy08g00839 Chy-Chr8:15901478 Chy11g00813 Chy-Chr11:11664482 0 dispersed
Chy08g00840 Chy-Chr8:15902789 Chy11g00813 Chy-Chr11:11664482 1.08E-112 dispersed
Chy11g00813 Chy-Chr11:11664482 Chy02g02705 Chy-Chr2:29881835 1.34E-74 dispersed
Chy11g01776 Chy-Chr11:24118846 Chy11g00813 Chy-Chr11:11664482 1.35E-12 dispersed
Chy11g00813 Chy-Chr11:11664482 Chy03g00953 Chy-Chr3:13093973 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
18712 PF02362 B3 1.40E-21 CL0405 Chy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Chy11g00813 - - csv:101216500 1373.99